Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2694 and GFF2695 are separated by 28 nucleotides GFF2695 and GFF2696 are separated by 19 nucleotides GFF2696 and GFF2697 overlap by 1 nucleotides
GFF2694 - hypothetical protein, at 122,482 to 123,504
GFF2694
GFF2695 - no description, at 123,533 to 124,543
GFF2695
GFF2696 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43), at 124,563 to 125,501
GFF2696
GFF2697 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 125,501 to 126,262
GFF2697
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1
2
3 at 122.583 kb on - strand at 122.753 kb on + strand, within GFF2694 at 122.754 kb on - strand, within GFF2694 at 122.832 kb on - strand, within GFF2694 at 123.206 kb on + strand, within GFF2694 at 123.206 kb on + strand, within GFF2694 at 123.206 kb on + strand, within GFF2694 at 123.206 kb on + strand, within GFF2694 at 123.207 kb on - strand, within GFF2694 at 123.207 kb on - strand, within GFF2694 at 123.207 kb on - strand, within GFF2694 at 123.207 kb on - strand, within GFF2694 at 123.505 kb on - strand at 123.633 kb on - strand at 123.758 kb on + strand, within GFF2695 at 123.758 kb on + strand, within GFF2695 at 123.759 kb on - strand, within GFF2695 at 123.821 kb on + strand, within GFF2695 at 123.822 kb on - strand, within GFF2695 at 124.016 kb on + strand, within GFF2695 at 124.016 kb on + strand, within GFF2695 at 124.019 kb on + strand, within GFF2695 at 124.094 kb on + strand, within GFF2695 at 124.094 kb on + strand, within GFF2695 at 124.095 kb on - strand, within GFF2695 at 124.115 kb on + strand, within GFF2695 at 124.115 kb on + strand, within GFF2695 at 124.116 kb on - strand, within GFF2695 at 125.108 kb on - strand, within GFF2696 at 125.108 kb on - strand, within GFF2696
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 122,583 - +0.1 122,753 + GFF2694 0.26 -0.5 122,754 - GFF2694 0.27 -0.5 122,832 - GFF2694 0.34 +0.3 123,206 + GFF2694 0.71 -0.7 123,206 + GFF2694 0.71 +0.6 123,206 + GFF2694 0.71 -0.1 123,206 + GFF2694 0.71 +1.3 123,207 - GFF2694 0.71 -0.2 123,207 - GFF2694 0.71 -0.2 123,207 - GFF2694 0.71 +0.1 123,207 - GFF2694 0.71 +0.0 123,505 - -0.0 123,633 - -0.8 123,758 + GFF2695 0.22 -1.0 123,758 + GFF2695 0.22 -0.6 123,759 - GFF2695 0.22 +0.3 123,821 + GFF2695 0.28 +1.4 123,822 - GFF2695 0.29 +0.4 124,016 + GFF2695 0.48 +0.5 124,016 + GFF2695 0.48 +0.3 124,019 + GFF2695 0.48 -0.4 124,094 + GFF2695 0.55 -0.1 124,094 + GFF2695 0.55 +0.5 124,095 - GFF2695 0.56 +3.6 124,115 + GFF2695 0.58 -0.4 124,115 + GFF2695 0.58 -0.3 124,116 - GFF2695 0.58 +0.2 125,108 - GFF2696 0.58 -1.0 125,108 - GFF2696 0.58 +0.9
Or see this region's nucleotide sequence