Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2667 and GFF2668 are separated by 9 nucleotides GFF2668 and GFF2669 overlap by 4 nucleotides GFF2669 and GFF2670 overlap by 4 nucleotides GFF2670 and GFF2671 overlap by 4 nucleotides
GFF2667 - COG4339 metal-dependent phosphohydrolase, HD superfamily, at 90,674 to 91,294
GFF2667
GFF2668 - hypothetical protein, at 91,304 to 91,792
GFF2668
GFF2669 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 91,789 to 92,859
GFF2669
GFF2670 - Acyl carrier protein, at 92,856 to 93,137
GFF2670
GFF2671 - Domain of unknown function / Efflux ABC transporter, permease protein, at 93,134 to 94,291
GFF2671
Position (kb) 91
92
93 Strain fitness (log2 ratio) -1
0
1 at 90.794 kb on + strand, within GFF2667 at 90.905 kb on + strand, within GFF2667 at 91.118 kb on + strand, within GFF2667 at 91.119 kb on - strand, within GFF2667 at 91.220 kb on + strand, within GFF2667 at 91.221 kb on - strand, within GFF2667 at 91.221 kb on - strand, within GFF2667 at 91.665 kb on + strand, within GFF2668 at 91.665 kb on + strand, within GFF2668 at 91.666 kb on - strand, within GFF2668 at 91.666 kb on - strand, within GFF2668 at 91.843 kb on + strand at 91.843 kb on + strand at 91.919 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.173 kb on + strand, within GFF2669 at 92.174 kb on - strand, within GFF2669 at 92.973 kb on + strand, within GFF2670 at 93.362 kb on + strand, within GFF2671 at 93.362 kb on + strand, within GFF2671 at 93.362 kb on + strand, within GFF2671 at 93.363 kb on - strand, within GFF2671
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 90,794 + GFF2667 0.19 -0.1 90,905 + GFF2667 0.37 -0.0 91,118 + GFF2667 0.71 -0.5 91,119 - GFF2667 0.72 -0.2 91,220 + GFF2667 0.88 -1.4 91,221 - GFF2667 0.88 -0.1 91,221 - GFF2667 0.88 +0.0 91,665 + GFF2668 0.74 +0.0 91,665 + GFF2668 0.74 +0.4 91,666 - GFF2668 0.74 +0.2 91,666 - GFF2668 0.74 +0.5 91,843 + +0.0 91,843 + +0.2 91,919 + GFF2669 0.12 +0.0 92,173 + GFF2669 0.36 +0.3 92,173 + GFF2669 0.36 -0.2 92,173 + GFF2669 0.36 +0.4 92,173 + GFF2669 0.36 -0.3 92,174 - GFF2669 0.36 +0.2 92,973 + GFF2670 0.41 -0.7 93,362 + GFF2671 0.20 +0.4 93,362 + GFF2671 0.20 +1.0 93,362 + GFF2671 0.20 +0.3 93,363 - GFF2671 0.20 +0.5
Or see this region's nucleotide sequence