Strain Fitness in Variovorax sp. SCN45 around GFF266

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF265 and GFF266 are separated by 10 nucleotidesGFF266 and GFF267 are separated by 71 nucleotidesGFF267 and GFF268 are separated by 63 nucleotides GFF265 - RND efflux system, membrane fusion protein, at 297,784 to 298,941 GFF265 GFF266 - RND efflux system, inner membrane transporter, at 298,952 to 302,038 GFF266 GFF267 - no description, at 302,110 to 302,352 GFF267 GFF268 - Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23), at 302,416 to 303,279 GFF268 Position (kb) 298 299 300 301 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.306 kb on + strand, within GFF265at 298.307 kb on - strand, within GFF265at 298.307 kb on - strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.357 kb on + strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.358 kb on - strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.627 kb on + strand, within GFF265at 298.628 kb on + strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.628 kb on - strand, within GFF265at 298.651 kb on + strand, within GFF265at 298.651 kb on + strand, within GFF265at 298.651 kb on + strand, within GFF265at 298.651 kb on + strand, within GFF265at 298.652 kb on - strand, within GFF265at 298.652 kb on - strand, within GFF265at 298.652 kb on - strand, within GFF265at 298.652 kb on - strand, within GFF265at 299.061 kb on - strandat 299.102 kb on + strandat 299.102 kb on + strandat 299.105 kb on + strandat 299.105 kb on + strandat 299.105 kb on + strandat 299.106 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.187 kb on - strandat 299.246 kb on + strandat 299.246 kb on + strandat 299.247 kb on - strandat 299.247 kb on - strandat 299.247 kb on - strandat 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.369 kb on + strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.370 kb on - strand, within GFF266at 299.381 kb on + strand, within GFF266at 299.381 kb on + strand, within GFF266at 299.381 kb on + strand, within GFF266at 299.382 kb on - strand, within GFF266at 299.585 kb on + strand, within GFF266at 299.585 kb on + strand, within GFF266at 299.585 kb on + strand, within GFF266at 299.586 kb on - strand, within GFF266at 299.586 kb on - strand, within GFF266at 299.586 kb on - strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.753 kb on + strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.754 kb on - strand, within GFF266at 299.805 kb on - strand, within GFF266at 299.909 kb on + strand, within GFF266at 299.909 kb on + strand, within GFF266at 299.909 kb on + strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.910 kb on - strand, within GFF266at 299.996 kb on + strand, within GFF266at 299.996 kb on + strand, within GFF266at 299.997 kb on - strand, within GFF266at 299.997 kb on - strand, within GFF266at 299.997 kb on - strand, within GFF266at 299.997 kb on - strand, within GFF266at 299.997 kb on - strand, within GFF266at 299.997 kb on - strand, within GFF266at 300.092 kb on + strand, within GFF266at 300.093 kb on - strand, within GFF266at 300.093 kb on - strand, within GFF266at 300.284 kb on + strand, within GFF266at 300.284 kb on + strand, within GFF266at 300.284 kb on + strand, within GFF266at 300.285 kb on - strand, within GFF266at 300.285 kb on - strand, within GFF266at 300.285 kb on - strand, within GFF266at 300.285 kb on - strand, within GFF266at 300.669 kb on + strand, within GFF266at 300.669 kb on + strand, within GFF266at 300.669 kb on + strand, within GFF266at 300.669 kb on + strand, within GFF266at 300.669 kb on + strand, within GFF266at 300.669 kb on + strand, within GFF266at 300.669 kb on + strand, within GFF266at 300.669 kb on + strand, within GFF266at 300.670 kb on - strand, within GFF266at 300.670 kb on - strand, within GFF266at 300.670 kb on - strand, within GFF266at 300.670 kb on - strand, within GFF266at 300.670 kb on - strand, within GFF266at 300.670 kb on - strand, within GFF266at 300.670 kb on - strand, within GFF266at 300.670 kb on - strand, within GFF266at 300.670 kb on - strand, within GFF266at 300.677 kb on + strand, within GFF266at 300.677 kb on + strand, within GFF266at 300.678 kb on - strand, within GFF266at 300.678 kb on - strand, within GFF266at 300.719 kb on + strand, within GFF266at 300.719 kb on + strand, within GFF266at 301.011 kb on - strand, within GFF266at 301.011 kb on - strand, within GFF266at 301.011 kb on - strand, within GFF266at 301.011 kb on - strand, within GFF266at 301.011 kb on - strand, within GFF266at 301.013 kb on + strand, within GFF266at 301.013 kb on + strand, within GFF266at 301.014 kb on - strand, within GFF266at 301.014 kb on - strand, within GFF266at 301.014 kb on - strand, within GFF266at 301.014 kb on - strand, within GFF266at 301.014 kb on - strand, within GFF266at 301.142 kb on + strand, within GFF266at 301.142 kb on + strand, within GFF266at 301.143 kb on - strand, within GFF266at 301.143 kb on - strand, within GFF266at 301.151 kb on + strand, within GFF266at 301.151 kb on + strand, within GFF266at 301.151 kb on + strand, within GFF266at 301.151 kb on + strand, within GFF266at 301.151 kb on + strand, within GFF266at 301.152 kb on - strand, within GFF266at 301.152 kb on - strand, within GFF266at 301.152 kb on - strand, within GFF266at 301.152 kb on - strand, within GFF266at 301.152 kb on - strand, within GFF266at 301.175 kb on + strand, within GFF266at 301.175 kb on + strand, within GFF266at 301.175 kb on + strand, within GFF266at 301.175 kb on + strand, within GFF266at 301.175 kb on + strand, within GFF266at 301.175 kb on + strand, within GFF266at 301.175 kb on + strand, within GFF266at 301.176 kb on - strand, within GFF266at 301.176 kb on - strand, within GFF266at 301.176 kb on - strand, within GFF266at 301.176 kb on - strand, within GFF266at 301.238 kb on + strand, within GFF266at 301.238 kb on + strand, within GFF266at 301.238 kb on + strand, within GFF266at 301.238 kb on + strand, within GFF266at 301.239 kb on - strand, within GFF266at 301.292 kb on + strand, within GFF266at 301.292 kb on + strand, within GFF266at 301.293 kb on - strand, within GFF266at 301.293 kb on - strand, within GFF266at 301.293 kb on - strand, within GFF266at 301.293 kb on - strand, within GFF266at 301.293 kb on - strand, within GFF266at 301.388 kb on + strand, within GFF266at 301.389 kb on - strand, within GFF266at 301.439 kb on + strand, within GFF266at 301.439 kb on + strand, within GFF266at 301.439 kb on + strand, within GFF266at 301.440 kb on - strand, within GFF266at 301.440 kb on - strand, within GFF266at 301.440 kb on - strand, within GFF266at 301.440 kb on - strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.640 kb on + strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.641 kb on - strand, within GFF266at 301.937 kb on + strandat 301.937 kb on + strandat 301.937 kb on + strandat 301.937 kb on + strandat 301.937 kb on + strandat 301.937 kb on + strandat 301.938 kb on - strandat 301.938 kb on - strandat 301.938 kb on - strandat 301.938 kb on - strandat 302.124 kb on - strandat 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.213 kb on + strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.214 kb on - strand, within GFF267at 302.270 kb on + strand, within GFF267at 302.270 kb on + strand, within GFF267at 302.270 kb on + strand, within GFF267at 302.270 kb on + strand, within GFF267at 302.271 kb on - strand, within GFF267at 302.271 kb on - strand, within GFF267at 302.405 kb on + strandat 302.427 kb on - strandat 302.488 kb on + strandat 302.489 kb on - strandat 302.489 kb on - strandat 302.489 kb on - strandat 302.489 kb on - strandat 302.588 kb on + strand, within GFF268at 302.588 kb on + strand, within GFF268at 302.589 kb on - strand, within GFF268at 302.589 kb on - strand, within GFF268at 302.604 kb on - strand, within GFF268

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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298,306 + GFF265 0.45 -1.4
298,306 + GFF265 0.45 -1.9
298,306 + GFF265 0.45 -0.6
298,306 + GFF265 0.45 -0.9
298,306 + GFF265 0.45 +1.4
298,306 + GFF265 0.45 +0.2
298,306 + GFF265 0.45 +0.8
298,306 + GFF265 0.45 -0.9
298,306 + GFF265 0.45 +1.8
298,306 + GFF265 0.45 -0.5
298,307 - GFF265 0.45 +0.5
298,307 - GFF265 0.45 -0.3
298,357 + GFF265 0.49 -1.0
298,357 + GFF265 0.49 -1.2
298,357 + GFF265 0.49 +0.9
298,357 + GFF265 0.49 -0.4
298,357 + GFF265 0.49 +0.1
298,357 + GFF265 0.49 -0.5
298,358 - GFF265 0.50 -0.4
298,358 - GFF265 0.50 -1.6
298,358 - GFF265 0.50 +0.0
298,358 - GFF265 0.50 +0.1
298,358 - GFF265 0.50 -0.8
298,358 - GFF265 0.50 +0.4
298,627 + GFF265 0.73 +0.1
298,627 + GFF265 0.73 -0.2
298,627 + GFF265 0.73 +0.8
298,627 + GFF265 0.73 -0.4
298,627 + GFF265 0.73 -0.2
298,627 + GFF265 0.73 -1.3
298,627 + GFF265 0.73 +0.1
298,627 + GFF265 0.73 +0.0
298,627 + GFF265 0.73 -0.2
298,627 + GFF265 0.73 -0.4
298,628 + GFF265 0.73 -1.6
298,628 - GFF265 0.73 -0.1
298,628 - GFF265 0.73 -1.5
298,628 - GFF265 0.73 +1.5
298,628 - GFF265 0.73 -1.2
298,628 - GFF265 0.73 -0.4
298,628 - GFF265 0.73 -1.4
298,651 + GFF265 0.75 -0.1
298,651 + GFF265 0.75 -0.1
298,651 + GFF265 0.75 +1.7
298,651 + GFF265 0.75 -0.5
298,652 - GFF265 0.75 -0.4
298,652 - GFF265 0.75 +0.1
298,652 - GFF265 0.75 +1.0
298,652 - GFF265 0.75 -1.8
299,061 - +1.1
299,102 + +0.2
299,102 + +0.5
299,105 + -0.3
299,105 + +0.0
299,105 + -1.2
299,106 - +0.5
299,187 - -0.7
299,187 - +0.7
299,187 - +1.1
299,187 - +1.5
299,187 - -0.7
299,187 - +0.8
299,187 - +1.1
299,187 - -0.0
299,187 - -1.0
299,246 + -0.2
299,246 + -0.7
299,247 - -1.5
299,247 - +1.5
299,247 - +0.3
299,369 + GFF266 0.14 +0.8
299,369 + GFF266 0.14 -0.5
299,369 + GFF266 0.14 +1.3
299,369 + GFF266 0.14 -0.1
299,369 + GFF266 0.14 -0.2
299,369 + GFF266 0.14 -0.9
299,369 + GFF266 0.14 -0.2
299,369 + GFF266 0.14 -1.4
299,369 + GFF266 0.14 -0.6
299,370 - GFF266 0.14 -0.6
299,370 - GFF266 0.14 +0.1
299,370 - GFF266 0.14 -0.3
299,370 - GFF266 0.14 -0.0
299,370 - GFF266 0.14 -0.3
299,370 - GFF266 0.14 +1.1
299,370 - GFF266 0.14 -1.1
299,370 - GFF266 0.14 -0.0
299,370 - GFF266 0.14 +0.2
299,381 + GFF266 0.14 -0.1
299,381 + GFF266 0.14 -0.6
299,381 + GFF266 0.14 -2.1
299,382 - GFF266 0.14 -1.1
299,585 + GFF266 0.21 -1.4
299,585 + GFF266 0.21 +0.3
299,585 + GFF266 0.21 +0.1
299,586 - GFF266 0.21 -1.9
299,586 - GFF266 0.21 -1.9
299,586 - GFF266 0.21 +0.1
299,753 + GFF266 0.26 +2.1
299,753 + GFF266 0.26 -0.2
299,753 + GFF266 0.26 +0.3
299,753 + GFF266 0.26 +0.8
299,753 + GFF266 0.26 -0.6
299,754 - GFF266 0.26 +0.6
299,754 - GFF266 0.26 -0.8
299,754 - GFF266 0.26 -0.6
299,754 - GFF266 0.26 -0.5
299,754 - GFF266 0.26 -1.6
299,754 - GFF266 0.26 -2.3
299,805 - GFF266 0.28 -0.5
299,909 + GFF266 0.31 -0.2
299,909 + GFF266 0.31 -0.7
299,909 + GFF266 0.31 +0.3
299,910 - GFF266 0.31 -0.3
299,910 - GFF266 0.31 +0.5
299,910 - GFF266 0.31 -0.2
299,910 - GFF266 0.31 +2.1
299,910 - GFF266 0.31 -0.8
299,910 - GFF266 0.31 -0.7
299,910 - GFF266 0.31 -0.6
299,910 - GFF266 0.31 +0.8
299,996 + GFF266 0.34 -0.7
299,996 + GFF266 0.34 -1.2
299,997 - GFF266 0.34 +0.9
299,997 - GFF266 0.34 -0.3
299,997 - GFF266 0.34 -0.3
299,997 - GFF266 0.34 -0.1
299,997 - GFF266 0.34 +0.1
299,997 - GFF266 0.34 -0.1
300,092 + GFF266 0.37 -0.6
300,093 - GFF266 0.37 +1.4
300,093 - GFF266 0.37 +0.9
300,284 + GFF266 0.43 -0.2
300,284 + GFF266 0.43 +0.5
300,284 + GFF266 0.43 +0.5
300,285 - GFF266 0.43 -0.5
300,285 - GFF266 0.43 -0.6
300,285 - GFF266 0.43 -0.5
300,285 - GFF266 0.43 -0.5
300,669 + GFF266 0.56 +0.3
300,669 + GFF266 0.56 -0.5
300,669 + GFF266 0.56 -0.1
300,669 + GFF266 0.56 +0.2
300,669 + GFF266 0.56 +2.3
300,669 + GFF266 0.56 -0.9
300,669 + GFF266 0.56 +0.3
300,669 + GFF266 0.56 -0.8
300,670 - GFF266 0.56 +0.4
300,670 - GFF266 0.56 -0.2
300,670 - GFF266 0.56 -1.0
300,670 - GFF266 0.56 -0.5
300,670 - GFF266 0.56 -0.1
300,670 - GFF266 0.56 +0.8
300,670 - GFF266 0.56 -1.2
300,670 - GFF266 0.56 +1.4
300,670 - GFF266 0.56 -0.6
300,677 + GFF266 0.56 -0.5
300,677 + GFF266 0.56 -0.0
300,678 - GFF266 0.56 +0.6
300,678 - GFF266 0.56 +0.1
300,719 + GFF266 0.57 -0.6
300,719 + GFF266 0.57 -0.0
301,011 - GFF266 0.67 -1.3
301,011 - GFF266 0.67 +0.8
301,011 - GFF266 0.67 -0.7
301,011 - GFF266 0.67 +0.4
301,011 - GFF266 0.67 -0.8
301,013 + GFF266 0.67 +1.2
301,013 + GFF266 0.67 -0.6
301,014 - GFF266 0.67 +0.1
301,014 - GFF266 0.67 -0.0
301,014 - GFF266 0.67 +0.5
301,014 - GFF266 0.67 +1.3
301,014 - GFF266 0.67 -0.9
301,142 + GFF266 0.71 -0.3
301,142 + GFF266 0.71 +0.5
301,143 - GFF266 0.71 +0.0
301,143 - GFF266 0.71 +0.2
301,151 + GFF266 0.71 -0.5
301,151 + GFF266 0.71 +1.1
301,151 + GFF266 0.71 -0.1
301,151 + GFF266 0.71 +0.3
301,151 + GFF266 0.71 -0.2
301,152 - GFF266 0.71 -0.4
301,152 - GFF266 0.71 +1.5
301,152 - GFF266 0.71 +0.2
301,152 - GFF266 0.71 -2.4
301,152 - GFF266 0.71 -0.4
301,175 + GFF266 0.72 -1.0
301,175 + GFF266 0.72 -1.8
301,175 + GFF266 0.72 +0.5
301,175 + GFF266 0.72 -1.2
301,175 + GFF266 0.72 -0.4
301,175 + GFF266 0.72 -0.4
301,175 + GFF266 0.72 -0.2
301,176 - GFF266 0.72 +0.0
301,176 - GFF266 0.72 -0.1
301,176 - GFF266 0.72 -0.4
301,176 - GFF266 0.72 -0.5
301,238 + GFF266 0.74 -0.6
301,238 + GFF266 0.74 -0.6
301,238 + GFF266 0.74 -0.9
301,238 + GFF266 0.74 -1.9
301,239 - GFF266 0.74 -0.6
301,292 + GFF266 0.76 -0.9
301,292 + GFF266 0.76 -2.4
301,293 - GFF266 0.76 -0.1
301,293 - GFF266 0.76 -0.5
301,293 - GFF266 0.76 -0.2
301,293 - GFF266 0.76 +0.7
301,293 - GFF266 0.76 +0.9
301,388 + GFF266 0.79 +0.2
301,389 - GFF266 0.79 +0.5
301,439 + GFF266 0.81 +0.4
301,439 + GFF266 0.81 -1.3
301,439 + GFF266 0.81 -0.4
301,440 - GFF266 0.81 +0.1
301,440 - GFF266 0.81 +0.9
301,440 - GFF266 0.81 +1.0
301,440 - GFF266 0.81 -0.2
301,640 + GFF266 0.87 -1.1
301,640 + GFF266 0.87 -0.7
301,640 + GFF266 0.87 -1.4
301,640 + GFF266 0.87 +0.5
301,640 + GFF266 0.87 -0.6
301,640 + GFF266 0.87 +0.8
301,640 + GFF266 0.87 -0.9
301,640 + GFF266 0.87 +1.7
301,641 - GFF266 0.87 -0.7
301,641 - GFF266 0.87 +0.8
301,641 - GFF266 0.87 -0.0
301,641 - GFF266 0.87 -2.1
301,641 - GFF266 0.87 -0.4
301,641 - GFF266 0.87 +0.1
301,641 - GFF266 0.87 +0.4
301,937 + +0.3
301,937 + +1.1
301,937 + -3.0
301,937 + +0.1
301,937 + -0.7
301,937 + -1.5
301,938 - -0.2
301,938 - +0.8
301,938 - -0.6
301,938 - -0.2
302,124 - -0.3
302,213 + GFF267 0.42 -0.6
302,213 + GFF267 0.42 -0.5
302,213 + GFF267 0.42 -1.3
302,213 + GFF267 0.42 -0.2
302,213 + GFF267 0.42 +0.7
302,213 + GFF267 0.42 -0.6
302,213 + GFF267 0.42 +0.0
302,213 + GFF267 0.42 -0.2
302,214 - GFF267 0.43 +0.3
302,214 - GFF267 0.43 -0.9
302,214 - GFF267 0.43 -1.1
302,214 - GFF267 0.43 -0.7
302,214 - GFF267 0.43 -0.5
302,270 + GFF267 0.66 +1.1
302,270 + GFF267 0.66 +0.7
302,270 + GFF267 0.66 -0.2
302,270 + GFF267 0.66 -1.2
302,271 - GFF267 0.66 -0.5
302,271 - GFF267 0.66 +0.2
302,405 + -0.2
302,427 - +0.5
302,488 + +0.9
302,489 - +0.7
302,489 - +1.1
302,489 - +1.1
302,489 - -1.4
302,588 + GFF268 0.20 -0.6
302,588 + GFF268 0.20 +1.0
302,589 - GFF268 0.20 -0.1
302,589 - GFF268 0.20 +0.8
302,604 - GFF268 0.22 +3.1

Or see this region's nucleotide sequence