Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2656 and GFF2657 overlap by 4 nucleotides GFF2657 and GFF2658 are separated by 79 nucleotides
GFF2656 - Acyltransferase 3, at 77,333 to 78,508
GFF2656
GFF2657 - putative oxidoreductase, nitronate monooxygenase family, at 78,505 to 79,467
GFF2657
GFF2658 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 79,547 to 81,337
GFF2658
Position (kb) 78
79
80 Strain fitness (log2 ratio) -1
0
1 at 77.565 kb on + strand, within GFF2656 at 77.805 kb on + strand, within GFF2656 at 77.805 kb on + strand, within GFF2656 at 77.806 kb on - strand, within GFF2656 at 77.806 kb on - strand, within GFF2656 at 77.806 kb on - strand, within GFF2656 at 77.821 kb on - strand, within GFF2656 at 78.015 kb on + strand, within GFF2656 at 78.016 kb on - strand, within GFF2656 at 78.042 kb on + strand, within GFF2656 at 78.043 kb on - strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.094 kb on + strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.095 kb on - strand, within GFF2656 at 78.354 kb on + strand, within GFF2656 at 78.379 kb on - strand, within GFF2656 at 78.536 kb on + strand at 78.537 kb on - strand at 78.734 kb on + strand, within GFF2657 at 78.735 kb on - strand, within GFF2657 at 78.809 kb on + strand, within GFF2657 at 78.809 kb on + strand, within GFF2657 at 78.809 kb on + strand, within GFF2657 at 78.809 kb on + strand, within GFF2657 at 78.810 kb on - strand, within GFF2657 at 79.101 kb on - strand, within GFF2657 at 79.101 kb on - strand, within GFF2657 at 79.101 kb on - strand, within GFF2657 at 79.101 kb on - strand, within GFF2657 at 79.166 kb on + strand, within GFF2657 at 79.166 kb on + strand, within GFF2657 at 79.166 kb on + strand, within GFF2657 at 79.166 kb on + strand, within GFF2657 at 79.167 kb on - strand, within GFF2657 at 79.271 kb on + strand, within GFF2657 at 79.271 kb on + strand, within GFF2657 at 79.496 kb on + strand at 79.496 kb on + strand at 79.642 kb on - strand at 79.642 kb on - strand at 79.642 kb on - strand at 79.770 kb on + strand, within GFF2658 at 79.770 kb on + strand, within GFF2658 at 80.025 kb on + strand, within GFF2658 at 80.025 kb on + strand, within GFF2658 at 80.025 kb on + strand, within GFF2658 at 80.025 kb on + strand, within GFF2658 at 80.026 kb on - strand, within GFF2658 at 80.026 kb on - strand, within GFF2658 at 80.026 kb on - strand, within GFF2658 at 80.055 kb on + strand, within GFF2658 at 80.055 kb on + strand, within GFF2658 at 80.055 kb on + strand, within GFF2658 at 80.056 kb on - strand, within GFF2658 at 80.056 kb on - strand, within GFF2658 at 80.146 kb on - strand, within GFF2658 at 80.176 kb on - strand, within GFF2658 at 80.176 kb on - strand, within GFF2658 at 80.232 kb on + strand, within GFF2658 at 80.403 kb on + strand, within GFF2658 at 80.403 kb on + strand, within GFF2658 at 80.404 kb on - strand, within GFF2658 at 80.446 kb on - strand, within GFF2658
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 77,565 + GFF2656 0.20 +0.7 77,805 + GFF2656 0.40 +1.0 77,805 + GFF2656 0.40 -1.0 77,806 - GFF2656 0.40 -0.1 77,806 - GFF2656 0.40 +0.4 77,806 - GFF2656 0.40 -1.2 77,821 - GFF2656 0.41 -0.0 78,015 + GFF2656 0.58 -0.9 78,016 - GFF2656 0.58 +0.5 78,042 + GFF2656 0.60 -0.0 78,043 - GFF2656 0.60 +0.5 78,094 + GFF2656 0.65 -0.2 78,094 + GFF2656 0.65 -0.3 78,094 + GFF2656 0.65 -0.8 78,094 + GFF2656 0.65 -0.5 78,094 + GFF2656 0.65 -0.4 78,094 + GFF2656 0.65 +0.4 78,095 - GFF2656 0.65 -0.3 78,095 - GFF2656 0.65 -0.6 78,095 - GFF2656 0.65 -0.4 78,095 - GFF2656 0.65 -0.0 78,095 - GFF2656 0.65 -0.5 78,354 + GFF2656 0.87 -0.3 78,379 - GFF2656 0.89 -0.2 78,536 + -0.2 78,537 - -0.4 78,734 + GFF2657 0.24 -0.8 78,735 - GFF2657 0.24 +0.0 78,809 + GFF2657 0.32 -0.2 78,809 + GFF2657 0.32 -0.2 78,809 + GFF2657 0.32 -0.1 78,809 + GFF2657 0.32 +1.6 78,810 - GFF2657 0.32 +0.9 79,101 - GFF2657 0.62 +0.6 79,101 - GFF2657 0.62 +0.9 79,101 - GFF2657 0.62 +0.4 79,101 - GFF2657 0.62 +0.5 79,166 + GFF2657 0.69 +0.8 79,166 + GFF2657 0.69 +0.4 79,166 + GFF2657 0.69 -0.3 79,166 + GFF2657 0.69 +0.0 79,167 - GFF2657 0.69 -0.5 79,271 + GFF2657 0.80 +0.1 79,271 + GFF2657 0.80 -0.1 79,496 + -0.3 79,496 + +0.6 79,642 - -0.5 79,642 - -0.5 79,642 - -0.5 79,770 + GFF2658 0.12 -0.7 79,770 + GFF2658 0.12 -0.3 80,025 + GFF2658 0.27 +0.5 80,025 + GFF2658 0.27 +0.1 80,025 + GFF2658 0.27 +0.1 80,025 + GFF2658 0.27 +0.7 80,026 - GFF2658 0.27 -0.6 80,026 - GFF2658 0.27 +1.0 80,026 - GFF2658 0.27 +1.7 80,055 + GFF2658 0.28 -0.4 80,055 + GFF2658 0.28 +0.8 80,055 + GFF2658 0.28 +0.6 80,056 - GFF2658 0.28 +0.2 80,056 - GFF2658 0.28 -0.3 80,146 - GFF2658 0.33 +0.5 80,176 - GFF2658 0.35 -0.0 80,176 - GFF2658 0.35 -0.5 80,232 + GFF2658 0.38 +1.0 80,403 + GFF2658 0.48 +0.1 80,403 + GFF2658 0.48 +0.2 80,404 - GFF2658 0.48 -1.4 80,446 - GFF2658 0.50 -0.1
Or see this region's nucleotide sequence