Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2640 and GFF2641 are separated by 31 nucleotides GFF2641 and GFF2642 overlap by 14 nucleotides GFF2642 and GFF2643 are separated by 62 nucleotides GFF2643 and GFF2644 are separated by 34 nucleotides
GFF2640 - PKHD-type hydroxylase YbiX, at 54,969 to 55,655
GFF2640
GFF2641 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 55,687 to 56,538
GFF2641
GFF2642 - Enoyl-CoA hydratase (EC 4.2.1.17), at 56,525 to 57,313
GFF2642
GFF2643 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 57,376 to 58,206
GFF2643
GFF2644 - MaoC family protein, at 58,241 to 58,660
GFF2644
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 55.562 kb on - strand, within GFF2640 at 55.621 kb on - strand at 55.621 kb on - strand at 55.621 kb on - strand at 55.621 kb on - strand at 55.653 kb on + strand at 55.654 kb on - strand at 56.071 kb on + strand, within GFF2641 at 56.071 kb on + strand, within GFF2641 at 56.071 kb on + strand, within GFF2641 at 56.071 kb on + strand, within GFF2641 at 56.071 kb on + strand, within GFF2641 at 56.072 kb on - strand, within GFF2641 at 56.072 kb on - strand, within GFF2641 at 56.104 kb on + strand, within GFF2641 at 56.104 kb on + strand, within GFF2641 at 56.105 kb on - strand, within GFF2641 at 56.105 kb on - strand, within GFF2641 at 56.105 kb on - strand, within GFF2641 at 56.105 kb on - strand, within GFF2641 at 56.191 kb on + strand, within GFF2641 at 56.191 kb on + strand, within GFF2641 at 56.192 kb on - strand, within GFF2641 at 56.354 kb on + strand, within GFF2641 at 56.717 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.868 kb on + strand, within GFF2642 at 56.869 kb on - strand, within GFF2642 at 56.869 kb on - strand, within GFF2642 at 56.869 kb on - strand, within GFF2642 at 56.869 kb on - strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.113 kb on + strand, within GFF2642 at 57.114 kb on - strand, within GFF2642 at 57.180 kb on - strand, within GFF2642 at 57.269 kb on + strand at 57.269 kb on + strand at 57.269 kb on + strand at 57.269 kb on + strand at 57.269 kb on + strand at 57.270 kb on - strand at 57.281 kb on + strand at 57.282 kb on - strand at 57.316 kb on - strand at 57.387 kb on + strand at 57.388 kb on - strand at 57.425 kb on + strand at 57.452 kb on + strand at 57.452 kb on + strand at 57.452 kb on + strand at 57.452 kb on + strand at 57.452 kb on + strand at 57.453 kb on - strand at 57.453 kb on - strand at 57.453 kb on - strand at 57.480 kb on + strand, within GFF2643 at 57.480 kb on + strand, within GFF2643 at 57.711 kb on - strand, within GFF2643 at 57.711 kb on - strand, within GFF2643 at 57.711 kb on - strand, within GFF2643 at 57.841 kb on + strand, within GFF2643 at 57.881 kb on + strand, within GFF2643 at 57.882 kb on - strand, within GFF2643 at 57.882 kb on - strand, within GFF2643 at 57.926 kb on + strand, within GFF2643 at 57.927 kb on - strand, within GFF2643 at 57.962 kb on + strand, within GFF2643
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 55,562 - GFF2640 0.86 -0.1 55,621 - +0.3 55,621 - -0.4 55,621 - +0.0 55,621 - -0.2 55,653 + +0.6 55,654 - -0.3 56,071 + GFF2641 0.45 +0.7 56,071 + GFF2641 0.45 -0.8 56,071 + GFF2641 0.45 +0.7 56,071 + GFF2641 0.45 +1.0 56,071 + GFF2641 0.45 +0.7 56,072 - GFF2641 0.45 +0.2 56,072 - GFF2641 0.45 +0.2 56,104 + GFF2641 0.49 -1.7 56,104 + GFF2641 0.49 +1.0 56,105 - GFF2641 0.49 -0.4 56,105 - GFF2641 0.49 -0.3 56,105 - GFF2641 0.49 +0.1 56,105 - GFF2641 0.49 +0.3 56,191 + GFF2641 0.59 -0.8 56,191 + GFF2641 0.59 +0.8 56,192 - GFF2641 0.59 -0.0 56,354 + GFF2641 0.78 +0.7 56,717 + GFF2642 0.24 -0.2 56,868 + GFF2642 0.43 -0.0 56,868 + GFF2642 0.43 -0.8 56,868 + GFF2642 0.43 +0.5 56,868 + GFF2642 0.43 -0.6 56,868 + GFF2642 0.43 -0.1 56,869 - GFF2642 0.44 -0.3 56,869 - GFF2642 0.44 +0.6 56,869 - GFF2642 0.44 +0.9 56,869 - GFF2642 0.44 -0.8 57,113 + GFF2642 0.75 +0.7 57,113 + GFF2642 0.75 +1.2 57,113 + GFF2642 0.75 +0.7 57,113 + GFF2642 0.75 +0.6 57,113 + GFF2642 0.75 -0.4 57,113 + GFF2642 0.75 -0.4 57,114 - GFF2642 0.75 -0.5 57,180 - GFF2642 0.83 -0.2 57,269 + +0.6 57,269 + +1.5 57,269 + -0.2 57,269 + +0.0 57,269 + +0.5 57,270 - +0.7 57,281 + -0.2 57,282 - -1.9 57,316 - +0.5 57,387 + -1.1 57,388 - +0.2 57,425 + +0.7 57,452 + +0.2 57,452 + +0.5 57,452 + +1.0 57,452 + +1.0 57,452 + +0.8 57,453 - -0.7 57,453 - +0.3 57,453 - -0.3 57,480 + GFF2643 0.13 +1.5 57,480 + GFF2643 0.13 +1.4 57,711 - GFF2643 0.40 +0.2 57,711 - GFF2643 0.40 +0.2 57,711 - GFF2643 0.40 +0.5 57,841 + GFF2643 0.56 -1.8 57,881 + GFF2643 0.61 +1.0 57,882 - GFF2643 0.61 -0.2 57,882 - GFF2643 0.61 -0.4 57,926 + GFF2643 0.66 -0.2 57,927 - GFF2643 0.66 +0.8 57,962 + GFF2643 0.71 +0.5
Or see this region's nucleotide sequence