Strain Fitness in Variovorax sp. SCN45 around GFF2622

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
30,969	+		GFF2621	0.46	-1.0
30,969	+		GFF2621	0.46	-1.3
30,970	-		GFF2621	0.46	-0.5
30,970	-		GFF2621	0.46	+0.2
30,970	-		GFF2621	0.46	-0.1
30,970	-		GFF2621	0.46	+1.2
31,258	+		GFF2621	0.63	-1.8
31,258	+		GFF2621	0.63	-0.2
31,259	-		GFF2621	0.63	-0.7
31,259	-		GFF2621	0.63	+0.0
31,259	-		GFF2621	0.63	-0.1
31,339	+		GFF2621	0.68	-0.5
31,339	+		GFF2621	0.68	-1.0
31,462	+		GFF2621	0.75	-0.5
31,462	+		GFF2621	0.75	-0.5
31,462	+		GFF2621	0.75	-0.3
31,463	-		GFF2621	0.75	-1.4
31,790	-				+0.6
31,801	+				-0.0
31,801	+				+0.7
31,801	+				-0.6
31,801	+				+0.6
31,801	+				-0.7
31,801	+				-0.1
31,801	+				-0.3
31,801	+				+0.0
31,802	-				-0.8
31,802	-				+0.8
31,802	-				+0.2
31,802	-				+0.3
31,802	-				+0.8
31,802	-				+0.3
31,933	+				+0.4
31,933	+				-0.1
31,933	+				+0.2
31,933	+				+0.2
31,933	+				+0.5
31,933	+				+0.8
31,934	-				-0.6
31,934	-				+0.1
31,934	-				-0.2
31,934	-				+0.0
31,992	+				-0.4
31,993	-				-0.7
32,062	+				+0.5
32,062	+				+0.1
32,068	+				+0.3
32,068	+				+0.1
32,068	+				-1.0
32,068	+				+0.0
32,068	+				-2.3
32,068	+				-0.1
32,069	-				-0.3
32,069	-				-0.1
32,130	+		GFF2622	0.12	-0.7
32,130	+		GFF2622	0.12	+1.1
32,130	+		GFF2622	0.12	+0.2
32,130	+		GFF2622	0.12	-1.2
32,131	-		GFF2622	0.12	-0.5
32,131	-		GFF2622	0.12	-1.3
32,418	+		GFF2622	0.29	+0.0
32,418	+		GFF2622	0.29	+0.6
32,418	+		GFF2622	0.29	+0.6
32,418	+		GFF2622	0.29	+0.1
32,418	+		GFF2622	0.29	-0.2
32,418	+		GFF2622	0.29	-0.0
32,418	+		GFF2622	0.29	+0.0
32,418	+		GFF2622	0.29	+0.3
32,418	+		GFF2622	0.29	+0.0
32,418	+		GFF2622	0.29	-0.2
32,418	+		GFF2622	0.29	+0.5
32,418	+		GFF2622	0.29	+0.5
32,418	+		GFF2622	0.29	+0.3
32,418	+		GFF2622	0.29	+0.0
32,418	+		GFF2622	0.29	-0.4
32,419	-		GFF2622	0.29	+0.1
32,419	-		GFF2622	0.29	+1.5
32,419	-		GFF2622	0.29	-1.3
32,419	-		GFF2622	0.29	+0.0
32,419	-		GFF2622	0.29	-0.2
32,419	-		GFF2622	0.29	-0.8
32,419	-		GFF2622	0.29	-0.8
32,419	-		GFF2622	0.29	-0.0
32,589	+		GFF2622	0.39	-0.5
32,589	+		GFF2622	0.39	+0.7
32,589	+		GFF2622	0.39	+0.0
32,590	-		GFF2622	0.39	+0.1
32,590	-		GFF2622	0.39	+0.2
32,590	-		GFF2622	0.39	+0.4
32,590	-		GFF2622	0.39	-0.2
32,590	-		GFF2622	0.39	-0.4
32,590	-		GFF2622	0.39	+0.1
32,796	+		GFF2622	0.52	+0.3
32,797	-		GFF2622	0.52	-0.1
32,797	-		GFF2622	0.52	+0.2
32,797	-		GFF2622	0.52	-0.1
32,797	-		GFF2622	0.52	+0.2
32,797	-		GFF2622	0.52	+0.1
32,881	+		GFF2622	0.57	-0.3
32,882	-		GFF2622	0.57	+0.5
32,882	-		GFF2622	0.57	+0.9
33,087	+		GFF2622	0.69	+0.9
33,087	+		GFF2622	0.69	+0.5
33,087	+		GFF2622	0.69	-0.9
33,088	-		GFF2622	0.69	+1.0
33,420	+		GFF2622	0.89	+0.3
33,421	-		GFF2622	0.89	-1.0
33,432	+		GFF2622	0.89	-0.3
33,552	+				-2.2
33,552	+				+0.4
33,552	+				-0.5
33,552	+				+0.3
33,552	+				-0.0
33,552	+				-0.4
33,552	+				+0.1
33,552	+				-0.5
33,552	+				+1.0
33,552	+				-0.7
33,552	+				+0.7
33,553	-				-0.7
33,553	-				-1.4
33,553	-				-0.2
33,553	-				+1.0
33,553	-				-0.7
33,668	+				+0.6
33,668	+				+0.1
33,668	+				-0.9
33,668	+				+0.7
33,668	+				-0.8
33,668	+				-1.6
33,668	+				+0.6
33,668	+				-0.3
33,668	+				+0.0
33,668	+				+0.2
33,668	+				-0.3
33,668	+				+0.3
33,668	+				-1.3
33,668	+				+0.0
33,669	-				-0.9
33,669	-				+0.2
33,669	-				-1.8
33,669	-				-0.6
33,669	-				-0.2
33,672	+				+0.2
33,672	+				-0.3
33,672	+				+1.7
33,672	+				-0.3
33,672	+				+1.5
33,672	+				-0.3
33,672	+				-0.5
33,672	+				+0.1
33,673	-				+0.4
33,673	-				-0.9
33,673	-				+0.2
33,673	-				+0.7
33,673	-				-0.2
33,868	+		GFF2623	0.12	+0.2
33,868	+		GFF2623	0.12	+1.2
33,868	+		GFF2623	0.12	+0.2
33,868	+		GFF2623	0.12	+1.6
33,869	-		GFF2623	0.12	+0.2
33,869	-		GFF2623	0.12	-0.4
33,869	-		GFF2623	0.12	+1.5
33,874	+		GFF2623	0.12	+0.5
33,874	+		GFF2623	0.12	-1.1
33,874	+		GFF2623	0.12	+0.6
33,874	+		GFF2623	0.12	+1.0
33,874	+		GFF2623	0.12	+0.2
33,874	+		GFF2623	0.12	-0.5
33,874	+		GFF2623	0.12	+1.2
33,874	+		GFF2623	0.12	+0.2
33,874	+		GFF2623	0.12	+0.2
33,875	-		GFF2623	0.12	-1.7
33,875	-		GFF2623	0.12	+1.7
33,875	-		GFF2623	0.12	+1.2
33,875	-		GFF2623	0.12	+0.3
33,875	-		GFF2623	0.12	+0.8
33,875	-		GFF2623	0.12	-1.1
33,875	-		GFF2623	0.12	+0.2
33,875	-		GFF2623	0.12	+0.5
33,875	-		GFF2623	0.12	-0.1
33,875	-		GFF2623	0.12	-0.2
33,875	-		GFF2623	0.12	+0.8
33,991	+		GFF2623	0.20	-0.4
33,991	+		GFF2623	0.20	-0.8
33,991	+		GFF2623	0.20	+2.0
33,991	+		GFF2623	0.20	-0.0
33,991	+		GFF2623	0.20	-1.3
33,991	+		GFF2623	0.20	-0.4
33,992	-		GFF2623	0.20	+1.2
33,992	-		GFF2623	0.20	+0.2
33,992	-		GFF2623	0.20	-0.5
33,992	-		GFF2623	0.20	-0.1
33,992	-		GFF2623	0.20	-0.0
34,033	+		GFF2623	0.22	-0.3
34,033	+		GFF2623	0.22	+0.3
34,034	-		GFF2623	0.22	+0.3
34,034	-		GFF2623	0.22	+1.6
34,034	-		GFF2623	0.22	+0.2
34,066	+		GFF2623	0.24	+0.1
34,067	-		GFF2623	0.24	+0.0
34,067	-		GFF2623	0.24	+1.6
34,067	-		GFF2623	0.24	-0.4
34,117	+		GFF2623	0.27	-0.3
34,117	+		GFF2623	0.27	-0.5
34,117	+		GFF2623	0.27	+0.9
34,118	-		GFF2623	0.27	+0.5
34,118	-		GFF2623	0.27	-0.3
34,118	-		GFF2623	0.27	+1.5
34,118	-		GFF2623	0.27	-0.8
34,118	-		GFF2623	0.27	-0.5
34,171	+		GFF2623	0.31	+0.0
34,171	+		GFF2623	0.31	+1.3
34,171	+		GFF2623	0.31	-2.2
34,171	+		GFF2623	0.31	-0.8
34,171	+		GFF2623	0.31	+1.1
34,171	+		GFF2623	0.31	+0.1
34,171	+		GFF2623	0.31	+0.1
34,171	+		GFF2623	0.31	-0.5
34,171	+		GFF2623	0.31	+1.0
34,171	+		GFF2623	0.31	+0.5
34,171	+		GFF2623	0.31	+3.9
34,171	+		GFF2623	0.31	-2.7
34,171	+		GFF2623	0.31	+0.3
34,171	+		GFF2623	0.31	-0.0
34,171	+		GFF2623	0.31	+2.0
34,171	+		GFF2623	0.31	+0.6
34,171	+		GFF2623	0.31	-0.4
34,172	-		GFF2623	0.31	+0.7
34,172	-		GFF2623	0.31	-0.1
34,172	-		GFF2623	0.31	-0.1
34,172	-		GFF2623	0.31	-0.1
34,172	-		GFF2623	0.31	+0.7
34,172	-		GFF2623	0.31	+0.5
34,172	-		GFF2623	0.31	-0.8
34,172	-		GFF2623	0.31	-1.9
34,172	-		GFF2623	0.31	-0.2
34,172	-		GFF2623	0.31	-0.4
34,172	-		GFF2623	0.31	+1.0
34,172	-		GFF2623	0.31	+0.6
34,172	-		GFF2623	0.31	+1.0
34,172	-		GFF2623	0.31	+1.3
34,172	-		GFF2623	0.31	-1.1
34,204	+		GFF2623	0.33	+0.2
34,204	+		GFF2623	0.33	+0.2
34,204	+		GFF2623	0.33	+0.6
34,204	+		GFF2623	0.33	+0.3
34,204	+		GFF2623	0.33	-0.3
34,204	+		GFF2623	0.33	+1.0
34,204	+		GFF2623	0.33	-0.2
34,205	-		GFF2623	0.33	+0.5
34,205	-		GFF2623	0.33	-0.3
34,205	-		GFF2623	0.33	-0.9
34,205	-		GFF2623	0.33	-1.0
34,205	-		GFF2623	0.33	+0.2
34,205	-		GFF2623	0.33	-0.6
34,286	-		GFF2623	0.38	+0.8
34,286	-		GFF2623	0.38	+1.0
34,312	+		GFF2623	0.39	+0.0
34,312	+		GFF2623	0.39	+0.5
34,313	-		GFF2623	0.40	-0.3
34,471	+		GFF2623	0.49	-0.5
34,471	+		GFF2623	0.49	+0.2
34,472	-		GFF2623	0.49	-0.1
34,472	-		GFF2623	0.49	+0.5
34,472	-		GFF2623	0.49	-1.4
34,472	-		GFF2623	0.49	+1.0
34,528	+		GFF2623	0.53	+0.7
34,528	+		GFF2623	0.53	-0.2
34,529	-		GFF2623	0.53	+0.6
34,529	-		GFF2623	0.53	-0.2
34,594	+		GFF2623	0.57	+1.5
34,594	+		GFF2623	0.57	-0.2
34,594	+		GFF2623	0.57	+0.6
34,594	+		GFF2623	0.57	-0.1
34,595	-		GFF2623	0.57	+0.6