Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2614 and GFF2615 are separated by 4 nucleotides GFF2615 and GFF2616 are separated by 272 nucleotides GFF2616 and GFF2617 are separated by 10 nucleotides
GFF2614 - no description, at 19,908 to 20,075
GFF2614
GFF2615 - no description, at 20,080 to 20,259
GFF2615
GFF2616 - no description, at 20,532 to 21,017
GFF2616
GFF2617 - no description, at 21,028 to 21,192
GFF2617
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.915 kb on - strand at 18.960 kb on - strand at 18.960 kb on - strand at 18.960 kb on - strand at 18.960 kb on - strand at 19.016 kb on + strand at 19.016 kb on + strand at 19.016 kb on + strand at 19.017 kb on - strand at 19.017 kb on - strand at 19.044 kb on - strand at 19.058 kb on - strand at 19.063 kb on + strand at 19.105 kb on + strand at 19.105 kb on + strand at 19.105 kb on + strand at 19.106 kb on - strand at 19.106 kb on - strand at 19.106 kb on - strand at 19.112 kb on + strand at 19.112 kb on + strand at 19.113 kb on - strand at 19.113 kb on - strand at 19.113 kb on - strand at 19.113 kb on - strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.312 kb on + strand at 19.359 kb on - strand at 19.393 kb on + strand at 19.393 kb on + strand at 19.393 kb on + strand at 19.393 kb on + strand at 19.394 kb on - strand at 19.394 kb on - strand at 19.394 kb on - strand at 19.394 kb on - strand at 19.422 kb on + strand at 19.422 kb on + strand at 19.422 kb on + strand at 19.423 kb on - strand at 19.423 kb on - strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.464 kb on + strand at 19.464 kb on + strand at 19.464 kb on + strand at 19.464 kb on + strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.485 kb on + strand at 19.485 kb on + strand at 19.486 kb on - strand at 19.505 kb on + strand at 19.505 kb on + strand at 19.506 kb on - strand at 19.506 kb on - strand at 19.506 kb on - strand at 19.506 kb on - strand at 19.509 kb on + strand at 19.509 kb on + strand at 19.510 kb on - strand at 19.510 kb on - strand at 19.614 kb on - strand at 19.614 kb on - strand at 19.614 kb on - strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.625 kb on + strand at 19.625 kb on + strand at 19.626 kb on - strand at 19.626 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.798 kb on + strand at 19.798 kb on + strand at 19.798 kb on + strand at 19.799 kb on - strand at 19.805 kb on + strand at 19.805 kb on + strand at 19.806 kb on - strand at 19.806 kb on - strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.826 kb on - strand at 19.826 kb on - strand at 19.826 kb on - strand at 19.884 kb on + strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.906 kb on + strand at 19.906 kb on + strand at 19.906 kb on + strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.926 kb on - strand, within GFF2614 at 19.942 kb on + strand, within GFF2614 at 19.943 kb on - strand, within GFF2614 at 20.062 kb on + strand at 20.073 kb on + strand at 20.073 kb on + strand at 20.074 kb on - strand at 20.074 kb on - strand at 20.074 kb on - strand at 20.074 kb on - strand at 20.081 kb on + strand at 20.082 kb on - strand at 20.108 kb on + strand, within GFF2615 at 20.173 kb on - strand, within GFF2615 at 20.296 kb on - strand at 20.296 kb on - strand at 20.411 kb on + strand at 20.411 kb on + strand at 20.411 kb on + strand at 20.443 kb on - strand at 20.524 kb on + strand at 20.533 kb on + strand at 20.593 kb on + strand, within GFF2616 at 20.594 kb on - strand, within GFF2616 at 20.594 kb on - strand, within GFF2616 at 20.722 kb on + strand, within GFF2616 at 20.729 kb on + strand, within GFF2616 at 20.729 kb on + strand, within GFF2616 at 20.730 kb on - strand, within GFF2616 at 20.730 kb on - strand, within GFF2616 at 20.731 kb on + strand, within GFF2616 at 20.735 kb on + strand, within GFF2616 at 20.943 kb on + strand, within GFF2616 at 20.944 kb on - strand, within GFF2616 at 21.006 kb on - strand at 21.029 kb on + strand at 21.030 kb on - strand at 21.030 kb on - strand at 21.030 kb on - strand at 21.048 kb on + strand, within GFF2617 at 21.048 kb on + strand, within GFF2617
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 18,915 - +1.3 18,960 - -0.3 18,960 - +0.3 18,960 - -0.0 18,960 - -0.2 19,016 + +0.1 19,016 + +0.6 19,016 + -0.4 19,017 - -0.4 19,017 - +0.3 19,044 - -0.1 19,058 - -0.3 19,063 + +1.0 19,105 + +1.2 19,105 + +1.5 19,105 + -0.3 19,106 - +1.5 19,106 - -0.2 19,106 - +0.1 19,112 + +0.6 19,112 + +0.9 19,113 - +0.0 19,113 - +0.7 19,113 - -0.0 19,113 - +0.2 19,139 + +0.2 19,139 + -1.1 19,312 + -0.1 19,359 - -0.6 19,393 + +0.6 19,393 + -1.0 19,393 + -0.3 19,393 + +1.6 19,394 - +1.0 19,394 - -0.2 19,394 - +0.2 19,394 - +0.6 19,422 + +1.0 19,422 + +0.2 19,422 + -1.5 19,423 - -0.8 19,423 - -0.0 19,462 + +1.3 19,462 + -0.8 19,462 + +0.8 19,462 + -0.2 19,462 + -1.1 19,462 + +0.1 19,463 - +1.0 19,463 - +0.5 19,463 - +0.2 19,463 - -0.6 19,463 - +0.5 19,464 + +0.2 19,464 + +0.8 19,464 + -0.5 19,464 + -0.2 19,465 - +0.3 19,465 - -0.7 19,465 - +0.2 19,465 - -1.5 19,485 + -1.0 19,485 + -0.0 19,486 - +0.2 19,505 + +2.5 19,505 + +0.5 19,506 - +0.2 19,506 - +0.8 19,506 - -0.2 19,506 - -0.6 19,509 + +2.6 19,509 + -0.3 19,510 - -0.5 19,510 - -0.4 19,614 - +0.8 19,614 - -0.1 19,614 - +0.2 19,622 + +0.0 19,622 + +3.0 19,622 + +0.1 19,622 + +0.9 19,622 + -1.4 19,622 + +1.5 19,622 + -0.3 19,622 + +0.0 19,622 + -0.6 19,622 + +0.1 19,622 + -0.8 19,622 + +0.5 19,623 - -0.5 19,623 - +0.3 19,623 - -0.1 19,623 - +0.5 19,623 - -1.5 19,623 - +0.1 19,623 - +0.1 19,623 - -0.6 19,623 - +1.2 19,623 - +0.5 19,623 - -0.7 19,625 + -0.4 19,625 + +1.6 19,626 - -1.9 19,626 - -0.8 19,641 - +0.2 19,641 - +0.3 19,641 - +0.1 19,641 - +0.0 19,641 - +2.0 19,641 - -0.8 19,641 - +0.0 19,668 - +0.4 19,668 - -0.1 19,668 - -0.2 19,668 - +0.2 19,754 + +0.7 19,754 + -0.6 19,754 + -0.5 19,754 + +0.5 19,754 + +0.1 19,754 + +1.5 19,754 + +0.2 19,754 + -0.2 19,754 + -0.7 19,754 + +0.5 19,754 + -0.0 19,754 + +0.3 19,754 + -0.3 19,754 + -0.9 19,754 + -0.8 19,798 + +1.0 19,798 + +0.5 19,798 + +0.7 19,799 - -0.5 19,805 + -0.4 19,805 + -0.1 19,806 - +0.1 19,806 - -0.1 19,825 + +1.0 19,825 + +0.2 19,825 + +0.1 19,825 + -0.7 19,825 + -0.0 19,825 + +0.5 19,825 + +1.0 19,825 + -0.2 19,825 + -0.6 19,825 + +0.2 19,825 + +0.1 19,826 - +0.7 19,826 - +0.5 19,826 - -0.2 19,884 + +0.3 19,885 - -0.0 19,885 - +0.2 19,885 - +0.1 19,885 - +0.1 19,891 + +0.4 19,891 + -0.0 19,891 + +0.8 19,891 + +0.4 19,891 + +0.3 19,891 + +1.3 19,891 + +0.7 19,891 + +1.2 19,891 + +0.0 19,891 + -0.1 19,891 + -0.3 19,891 + +3.0 19,891 + +0.6 19,891 + -0.7 19,891 + -2.0 19,891 + +0.3 19,891 + -0.3 19,892 - +0.0 19,892 - -0.4 19,892 - +1.5 19,892 - +0.1 19,892 - -1.0 19,892 - +0.1 19,892 - +0.5 19,892 - -0.4 19,906 + +0.0 19,906 + -0.1 19,906 + +0.2 19,907 - +0.1 19,907 - +0.3 19,907 - -0.5 19,907 - +0.5 19,907 - +1.5 19,907 - +0.9 19,907 - +0.4 19,926 - GFF2614 0.11 +0.9 19,942 + GFF2614 0.20 +0.3 19,943 - GFF2614 0.21 +0.4 20,062 + +0.1 20,073 + -0.4 20,073 + -1.1 20,074 - +0.0 20,074 - +0.9 20,074 - -0.5 20,074 - -2.9 20,081 + -0.1 20,082 - -0.1 20,108 + GFF2615 0.16 -0.3 20,173 - GFF2615 0.52 +1.4 20,296 - +0.2 20,296 - +0.3 20,411 + -0.2 20,411 + +0.0 20,411 + +0.0 20,443 - -0.1 20,524 + +0.3 20,533 + +1.0 20,593 + GFF2616 0.13 -0.3 20,594 - GFF2616 0.13 -0.2 20,594 - GFF2616 0.13 -0.3 20,722 + GFF2616 0.39 +0.1 20,729 + GFF2616 0.41 -1.0 20,729 + GFF2616 0.41 -0.1 20,730 - GFF2616 0.41 +1.0 20,730 - GFF2616 0.41 +0.2 20,731 + GFF2616 0.41 +0.3 20,735 + GFF2616 0.42 -0.6 20,943 + GFF2616 0.85 -0.3 20,944 - GFF2616 0.85 +0.5 21,006 - -1.0 21,029 + -0.1 21,030 - -0.1 21,030 - +0.0 21,030 - -0.8 21,048 + GFF2617 0.12 +0.0 21,048 + GFF2617 0.12 +0.1
Or see this region's nucleotide sequence