Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2586 and GFF2587 are separated by 7 nucleotides GFF2587 and GFF2588 overlap by 37 nucleotides
GFF2586 - Hydrogenase assembly protein HoxX, at 641,633 to 643,354
GFF2586
GFF2587 - hypothetical protein, at 643,362 to 643,628
GFF2587
GFF2588 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 643,592 to 645,688
GFF2588
Position (kb) 643
644 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.638 kb on + strand, within GFF2586 at 642.638 kb on + strand, within GFF2586 at 642.639 kb on - strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.924 kb on - strand, within GFF2586 at 642.924 kb on - strand, within GFF2586 at 642.924 kb on - strand, within GFF2586 at 642.924 kb on - strand, within GFF2586 at 642.953 kb on + strand, within GFF2586 at 642.954 kb on - strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 643.363 kb on + strand at 643.363 kb on + strand at 643.363 kb on + strand at 643.363 kb on + strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.498 kb on - strand, within GFF2587 at 643.498 kb on - strand, within GFF2587 at 643.498 kb on - strand, within GFF2587 at 643.498 kb on - strand, within GFF2587 at 643.776 kb on + strand at 643.776 kb on + strand at 643.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 642,428 + GFF2586 0.46 -0.6 642,428 + GFF2586 0.46 -0.7 642,428 + GFF2586 0.46 -0.2 642,428 + GFF2586 0.46 +0.5 642,428 + GFF2586 0.46 +0.5 642,428 + GFF2586 0.46 -0.1 642,429 - GFF2586 0.46 -0.4 642,429 - GFF2586 0.46 -0.7 642,429 - GFF2586 0.46 -0.4 642,429 - GFF2586 0.46 -0.5 642,638 + GFF2586 0.58 +4.7 642,638 + GFF2586 0.58 -1.0 642,639 - GFF2586 0.58 +0.2 642,923 + GFF2586 0.75 -0.9 642,923 + GFF2586 0.75 -0.1 642,923 + GFF2586 0.75 +0.1 642,923 + GFF2586 0.75 +0.7 642,923 + GFF2586 0.75 -1.6 642,924 - GFF2586 0.75 -1.0 642,924 - GFF2586 0.75 -1.2 642,924 - GFF2586 0.75 -1.4 642,924 - GFF2586 0.75 -0.5 642,953 + GFF2586 0.77 -1.0 642,954 - GFF2586 0.77 -1.0 642,962 + GFF2586 0.77 -0.1 642,962 + GFF2586 0.77 +0.6 642,962 + GFF2586 0.77 -0.0 642,962 + GFF2586 0.77 +0.1 642,962 + GFF2586 0.77 +0.5 642,962 + GFF2586 0.77 -0.4 642,962 + GFF2586 0.77 -0.3 642,962 + GFF2586 0.77 -0.3 642,962 + GFF2586 0.77 -1.1 642,962 + GFF2586 0.77 +1.1 642,962 + GFF2586 0.77 -0.4 642,962 + GFF2586 0.77 +0.3 642,962 + GFF2586 0.77 -1.0 642,963 - GFF2586 0.77 +0.6 642,963 - GFF2586 0.77 +1.5 642,963 - GFF2586 0.77 -0.4 642,963 - GFF2586 0.77 +0.7 642,963 - GFF2586 0.77 +1.3 642,963 - GFF2586 0.77 +0.5 642,963 - GFF2586 0.77 -0.2 642,963 - GFF2586 0.77 -0.6 643,363 + -0.2 643,363 + +0.4 643,363 + -0.5 643,363 + +0.2 643,364 - -0.2 643,364 - -0.6 643,364 - +0.6 643,364 - -1.3 643,364 - -0.4 643,364 - +0.6 643,364 - +0.2 643,364 - +0.1 643,364 - -0.7 643,497 + GFF2587 0.51 -0.3 643,497 + GFF2587 0.51 -0.9 643,497 + GFF2587 0.51 -0.3 643,497 + GFF2587 0.51 -0.9 643,497 + GFF2587 0.51 -1.1 643,497 + GFF2587 0.51 +0.6 643,497 + GFF2587 0.51 +0.5 643,497 + GFF2587 0.51 +1.8 643,498 - GFF2587 0.51 -0.5 643,498 - GFF2587 0.51 -0.5 643,498 - GFF2587 0.51 -1.6 643,498 - GFF2587 0.51 -0.4 643,776 + -0.5 643,776 + +4.1 643,777 - -0.6
Or see this region's nucleotide sequence