Strain Fitness in Variovorax sp. SCN45 around GFF2535

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2534 and GFF2535 are separated by 15 nucleotidesGFF2535 and GFF2536 are separated by 48 nucleotides GFF2534 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 594,638 to 595,645 GFF2534 GFF2535 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 595,661 to 596,509 GFF2535 GFF2536 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 596,558 to 597,439 GFF2536 Position (kb) 595 596 597Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 595.341 kb on + strand, within GFF2534at 595.341 kb on + strand, within GFF2534at 595.342 kb on - strand, within GFF2534at 595.342 kb on - strand, within GFF2534at 595.342 kb on - strand, within GFF2534at 595.374 kb on + strand, within GFF2534at 595.374 kb on + strand, within GFF2534at 595.375 kb on - strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.628 kb on + strandat 595.628 kb on + strandat 595.628 kb on + strandat 595.629 kb on - strandat 595.629 kb on - strandat 595.629 kb on - strandat 595.629 kb on - strandat 595.662 kb on + strandat 595.662 kb on + strandat 595.663 kb on - strandat 595.663 kb on - strandat 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.824 kb on + strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.825 kb on - strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.863 kb on + strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.864 kb on - strand, within GFF2535at 595.878 kb on + strand, within GFF2535at 595.878 kb on + strand, within GFF2535at 595.878 kb on + strand, within GFF2535at 595.879 kb on - strand, within GFF2535at 595.879 kb on - strand, within GFF2535at 595.879 kb on - strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.109 kb on + strand, within GFF2535at 596.110 kb on - strand, within GFF2535at 596.110 kb on - strand, within GFF2535at 596.110 kb on - strand, within GFF2535at 596.110 kb on - strand, within GFF2535at 596.195 kb on + strand, within GFF2535at 596.196 kb on + strand, within GFF2535at 596.196 kb on + strand, within GFF2535at 596.196 kb on + strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.197 kb on - strand, within GFF2535at 596.337 kb on + strand, within GFF2535at 596.337 kb on + strand, within GFF2535at 596.337 kb on + strand, within GFF2535at 596.337 kb on + strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.338 kb on - strand, within GFF2535at 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.427 kb on + strandat 596.428 kb on - strandat 596.428 kb on - strandat 596.428 kb on - strandat 596.428 kb on - strandat 596.428 kb on - strandat 596.562 kb on + strandat 596.563 kb on - strandat 596.563 kb on - strandat 596.583 kb on + strandat 596.583 kb on + strandat 596.583 kb on + strandat 596.682 kb on + strand, within GFF2536at 596.682 kb on + strand, within GFF2536at 596.683 kb on - strand, within GFF2536at 596.683 kb on - strand, within GFF2536at 596.683 kb on - strand, within GFF2536at 596.683 kb on - strand, within GFF2536at 596.683 kb on - strand, within GFF2536at 596.683 kb on - strand, within GFF2536at 596.683 kb on - strand, within GFF2536at 596.691 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.769 kb on + strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.770 kb on - strand, within GFF2536at 596.928 kb on + strand, within GFF2536at 596.928 kb on + strand, within GFF2536at 596.929 kb on - strand, within GFF2536at 596.929 kb on - strand, within GFF2536at 596.929 kb on - strand, within GFF2536at 596.929 kb on - strand, within GFF2536at 596.929 kb on - strand, within GFF2536at 597.028 kb on - strand, within GFF2536at 597.099 kb on + strand, within GFF2536at 597.099 kb on + strand, within GFF2536at 597.100 kb on - strand, within GFF2536at 597.124 kb on - strand, within GFF2536at 597.124 kb on - strand, within GFF2536at 597.124 kb on - strand, within GFF2536at 597.124 kb on - strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.240 kb on + strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.241 kb on - strand, within GFF2536at 597.468 kb on + strandat 597.468 kb on + strandat 597.468 kb on + strandat 597.468 kb on + strandat 597.468 kb on + strandat 597.468 kb on + strandat 597.468 kb on + strandat 597.468 kb on + strandat 597.468 kb on + strandat 597.469 kb on - strandat 597.469 kb on - strandat 597.469 kb on - strandat 597.469 kb on - strandat 597.469 kb on - strandat 597.469 kb on - strandat 597.469 kb on - strandat 597.469 kb on - strandat 597.472 kb on + strandat 597.473 kb on - strandat 597.473 kb on - strandat 597.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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594,780 + GFF2534 0.14 -0.7
594,780 + GFF2534 0.14 +0.8
594,780 + GFF2534 0.14 +0.1
594,780 + GFF2534 0.14 +0.6
594,780 + GFF2534 0.14 +0.1
594,781 - GFF2534 0.14 +0.5
594,781 - GFF2534 0.14 -1.1
594,781 - GFF2534 0.14 +0.3
594,781 - GFF2534 0.14 -0.1
594,969 + GFF2534 0.33 -1.1
594,969 + GFF2534 0.33 -0.2
594,969 + GFF2534 0.33 +1.4
594,969 + GFF2534 0.33 +0.1
594,969 + GFF2534 0.33 -0.1
594,969 + GFF2534 0.33 -0.3
594,969 + GFF2534 0.33 +1.3
594,969 + GFF2534 0.33 +1.1
594,969 + GFF2534 0.33 -0.3
594,970 - GFF2534 0.33 -0.5
594,970 - GFF2534 0.33 -0.1
594,970 - GFF2534 0.33 -1.6
594,970 - GFF2534 0.33 -1.1
594,970 - GFF2534 0.33 -0.4
594,970 - GFF2534 0.33 +1.3
594,970 - GFF2534 0.33 -0.1
594,970 - GFF2534 0.33 -0.6
594,970 - GFF2534 0.33 +0.1
594,970 - GFF2534 0.33 -0.4
594,970 - GFF2534 0.33 -1.1
594,970 - GFF2534 0.33 -0.8
594,970 - GFF2534 0.33 -0.4
595,341 + GFF2534 0.70 -1.5
595,341 + GFF2534 0.70 +1.1
595,342 - GFF2534 0.70 +0.2
595,342 - GFF2534 0.70 +1.2
595,342 - GFF2534 0.70 -0.6
595,374 + GFF2534 0.73 -0.3
595,374 + GFF2534 0.73 -0.3
595,375 - GFF2534 0.73 +0.5
595,383 + GFF2534 0.74 +0.2
595,383 + GFF2534 0.74 +0.7
595,383 + GFF2534 0.74 +0.5
595,383 + GFF2534 0.74 -0.1
595,383 + GFF2534 0.74 -0.3
595,384 - GFF2534 0.74 +1.1
595,384 - GFF2534 0.74 -0.2
595,384 - GFF2534 0.74 -1.3
595,384 - GFF2534 0.74 -0.2
595,384 - GFF2534 0.74 +0.1
595,384 - GFF2534 0.74 +0.0
595,628 + +1.5
595,628 + -0.5
595,628 + +0.3
595,629 - -0.4
595,629 - +0.1
595,629 - +0.0
595,629 - -0.2
595,662 + -0.4
595,662 + +0.3
595,663 - +0.2
595,663 - -0.5
595,824 + GFF2535 0.19 -1.1
595,824 + GFF2535 0.19 +0.5
595,824 + GFF2535 0.19 +1.1
595,824 + GFF2535 0.19 +0.6
595,824 + GFF2535 0.19 -0.8
595,824 + GFF2535 0.19 +0.5
595,824 + GFF2535 0.19 +0.2
595,824 + GFF2535 0.19 -0.8
595,824 + GFF2535 0.19 +0.3
595,824 + GFF2535 0.19 -0.8
595,824 + GFF2535 0.19 -0.4
595,824 + GFF2535 0.19 -0.8
595,824 + GFF2535 0.19 -0.1
595,825 - GFF2535 0.19 -1.3
595,825 - GFF2535 0.19 +0.6
595,825 - GFF2535 0.19 -0.4
595,825 - GFF2535 0.19 -0.5
595,825 - GFF2535 0.19 +0.8
595,825 - GFF2535 0.19 -0.3
595,825 - GFF2535 0.19 +0.1
595,825 - GFF2535 0.19 -1.7
595,863 + GFF2535 0.24 -0.6
595,863 + GFF2535 0.24 +0.0
595,863 + GFF2535 0.24 +1.1
595,863 + GFF2535 0.24 -0.4
595,863 + GFF2535 0.24 +0.7
595,863 + GFF2535 0.24 -0.1
595,863 + GFF2535 0.24 +1.4
595,863 + GFF2535 0.24 -0.1
595,863 + GFF2535 0.24 -0.9
595,864 - GFF2535 0.24 -0.6
595,864 - GFF2535 0.24 -0.6
595,864 - GFF2535 0.24 +0.5
595,864 - GFF2535 0.24 +0.7
595,864 - GFF2535 0.24 +3.8
595,864 - GFF2535 0.24 -0.3
595,878 + GFF2535 0.26 -0.5
595,878 + GFF2535 0.26 +0.2
595,878 + GFF2535 0.26 +1.3
595,879 - GFF2535 0.26 +0.3
595,879 - GFF2535 0.26 -0.7
595,879 - GFF2535 0.26 -0.4
596,109 + GFF2535 0.53 -0.4
596,109 + GFF2535 0.53 -0.4
596,109 + GFF2535 0.53 -0.5
596,109 + GFF2535 0.53 -0.5
596,109 + GFF2535 0.53 +0.5
596,109 + GFF2535 0.53 -0.1
596,110 - GFF2535 0.53 -0.1
596,110 - GFF2535 0.53 -0.1
596,110 - GFF2535 0.53 -1.1
596,110 - GFF2535 0.53 -0.6
596,195 + GFF2535 0.63 -0.6
596,196 + GFF2535 0.63 +0.1
596,196 + GFF2535 0.63 -0.1
596,196 + GFF2535 0.63 -1.1
596,197 - GFF2535 0.63 -1.3
596,197 - GFF2535 0.63 +0.2
596,197 - GFF2535 0.63 +4.1
596,197 - GFF2535 0.63 -0.1
596,197 - GFF2535 0.63 -0.9
596,197 - GFF2535 0.63 +0.3
596,337 + GFF2535 0.80 -0.3
596,337 + GFF2535 0.80 -0.2
596,337 + GFF2535 0.80 -0.0
596,337 + GFF2535 0.80 +0.0
596,338 - GFF2535 0.80 -0.9
596,338 - GFF2535 0.80 -0.0
596,338 - GFF2535 0.80 -0.3
596,338 - GFF2535 0.80 +0.7
596,338 - GFF2535 0.80 -0.5
596,338 - GFF2535 0.80 +0.2
596,427 + -0.1
596,427 + +0.2
596,427 + -0.1
596,427 + -1.3
596,427 + -1.3
596,427 + +1.1
596,427 + +0.5
596,427 + +0.4
596,427 + -1.4
596,428 - -0.5
596,428 - -0.3
596,428 - -0.7
596,428 - +0.1
596,428 - +0.3
596,562 + -0.3
596,563 - +0.0
596,563 - +0.3
596,583 + +0.5
596,583 + +0.3
596,583 + +0.3
596,682 + GFF2536 0.14 -0.3
596,682 + GFF2536 0.14 +0.1
596,683 - GFF2536 0.14 -1.3
596,683 - GFF2536 0.14 +1.8
596,683 - GFF2536 0.14 +0.3
596,683 - GFF2536 0.14 -0.5
596,683 - GFF2536 0.14 -0.0
596,683 - GFF2536 0.14 +0.7
596,683 - GFF2536 0.14 +1.1
596,691 + GFF2536 0.15 +0.0
596,769 + GFF2536 0.24 -0.4
596,769 + GFF2536 0.24 -0.7
596,769 + GFF2536 0.24 -0.6
596,769 + GFF2536 0.24 +1.1
596,769 + GFF2536 0.24 -0.4
596,769 + GFF2536 0.24 -0.1
596,769 + GFF2536 0.24 -0.5
596,769 + GFF2536 0.24 +0.1
596,769 + GFF2536 0.24 +0.2
596,769 + GFF2536 0.24 +1.1
596,769 + GFF2536 0.24 -0.9
596,769 + GFF2536 0.24 +0.2
596,769 + GFF2536 0.24 +0.3
596,769 + GFF2536 0.24 +0.5
596,769 + GFF2536 0.24 -0.2
596,769 + GFF2536 0.24 -0.6
596,769 + GFF2536 0.24 -0.3
596,769 + GFF2536 0.24 -0.9
596,769 + GFF2536 0.24 +0.3
596,770 - GFF2536 0.24 +0.3
596,770 - GFF2536 0.24 +0.6
596,770 - GFF2536 0.24 -0.4
596,770 - GFF2536 0.24 -1.7
596,770 - GFF2536 0.24 +0.5
596,770 - GFF2536 0.24 -1.0
596,770 - GFF2536 0.24 +1.6
596,770 - GFF2536 0.24 +1.5
596,770 - GFF2536 0.24 -0.1
596,770 - GFF2536 0.24 +0.2
596,770 - GFF2536 0.24 -1.0
596,770 - GFF2536 0.24 -0.0
596,770 - GFF2536 0.24 +0.6
596,770 - GFF2536 0.24 -0.2
596,770 - GFF2536 0.24 +0.4
596,928 + GFF2536 0.42 +1.1
596,928 + GFF2536 0.42 +1.1
596,929 - GFF2536 0.42 +0.6
596,929 - GFF2536 0.42 +0.2
596,929 - GFF2536 0.42 +0.1
596,929 - GFF2536 0.42 +1.1
596,929 - GFF2536 0.42 +0.0
597,028 - GFF2536 0.53 -0.2
597,099 + GFF2536 0.61 -0.2
597,099 + GFF2536 0.61 -0.6
597,100 - GFF2536 0.61 +0.2
597,124 - GFF2536 0.64 -0.6
597,124 - GFF2536 0.64 +0.1
597,124 - GFF2536 0.64 +0.4
597,124 - GFF2536 0.64 -0.1
597,240 + GFF2536 0.77 +0.1
597,240 + GFF2536 0.77 +0.1
597,240 + GFF2536 0.77 -0.3
597,240 + GFF2536 0.77 -0.6
597,240 + GFF2536 0.77 -1.2
597,240 + GFF2536 0.77 -0.8
597,240 + GFF2536 0.77 -0.5
597,240 + GFF2536 0.77 +1.1
597,240 + GFF2536 0.77 +0.1
597,240 + GFF2536 0.77 -0.2
597,240 + GFF2536 0.77 -0.4
597,240 + GFF2536 0.77 -0.1
597,240 + GFF2536 0.77 +1.1
597,240 + GFF2536 0.77 +0.1
597,240 + GFF2536 0.77 -0.6
597,240 + GFF2536 0.77 -0.4
597,240 + GFF2536 0.77 +1.0
597,240 + GFF2536 0.77 -0.7
597,240 + GFF2536 0.77 -0.0
597,240 + GFF2536 0.77 +0.5
597,240 + GFF2536 0.77 +0.1
597,241 - GFF2536 0.77 -2.0
597,241 - GFF2536 0.77 +1.3
597,241 - GFF2536 0.77 -0.2
597,241 - GFF2536 0.77 -1.3
597,241 - GFF2536 0.77 +0.6
597,241 - GFF2536 0.77 +4.8
597,241 - GFF2536 0.77 -0.1
597,241 - GFF2536 0.77 -0.9
597,241 - GFF2536 0.77 +0.5
597,241 - GFF2536 0.77 -0.5
597,241 - GFF2536 0.77 -0.0
597,241 - GFF2536 0.77 -0.3
597,241 - GFF2536 0.77 -0.1
597,241 - GFF2536 0.77 -0.5
597,241 - GFF2536 0.77 -0.3
597,241 - GFF2536 0.77 -0.0
597,241 - GFF2536 0.77 +0.1
597,468 + +0.5
597,468 + -0.7
597,468 + -0.8
597,468 + +0.1
597,468 + +1.1
597,468 + +0.5
597,468 + +0.1
597,468 + -1.1
597,468 + -0.5
597,469 - +0.0
597,469 - +0.4
597,469 - +0.6
597,469 - -0.6
597,469 - -0.1
597,469 - +0.8
597,469 - -1.1
597,469 - -0.9
597,472 + +0.2
597,473 - -0.2
597,473 - +1.2
597,473 - +0.1

Or see this region's nucleotide sequence