Strain Fitness in Variovorax sp. SCN45 around GFF2501

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2499 and GFF2500 overlap by 4 nucleotidesGFF2500 and GFF2501 are separated by 86 nucleotidesGFF2501 and GFF2502 are separated by 18 nucleotides GFF2499 - ATP/GTP-binding protein, at 559,604 to 560,479 GFF2499 GFF2500 - Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-), at 560,476 to 560,910 GFF2500 GFF2501 - O-antigen acetylase, at 560,997 to 562,961 GFF2501 GFF2502 - O-antigen acetylase, at 562,980 to 564,953 GFF2502 Position (kb) 560 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 560.081 kb on + strand, within GFF2499at 560.081 kb on + strand, within GFF2499at 560.081 kb on + strand, within GFF2499at 560.081 kb on + strand, within GFF2499at 560.081 kb on + strand, within GFF2499at 560.082 kb on - strand, within GFF2499at 560.082 kb on - strand, within GFF2499at 560.082 kb on - strand, within GFF2499at 560.082 kb on - strand, within GFF2499at 560.144 kb on + strand, within GFF2499at 560.145 kb on - strand, within GFF2499at 560.145 kb on - strand, within GFF2499at 560.145 kb on - strand, within GFF2499at 560.180 kb on + strand, within GFF2499at 560.181 kb on - strand, within GFF2499at 560.181 kb on - strand, within GFF2499at 560.201 kb on + strand, within GFF2499at 560.201 kb on + strand, within GFF2499at 560.202 kb on - strand, within GFF2499at 560.202 kb on - strand, within GFF2499at 560.294 kb on + strand, within GFF2499at 560.294 kb on + strand, within GFF2499at 560.295 kb on - strand, within GFF2499at 560.295 kb on - strand, within GFF2499at 560.295 kb on - strand, within GFF2499at 560.295 kb on - strand, within GFF2499at 560.315 kb on + strand, within GFF2499at 560.315 kb on + strand, within GFF2499at 560.316 kb on - strand, within GFF2499at 560.316 kb on - strand, within GFF2499at 560.438 kb on + strandat 560.439 kb on - strandat 560.456 kb on + strandat 560.457 kb on - strandat 560.457 kb on - strandat 560.575 kb on + strand, within GFF2500at 560.575 kb on + strand, within GFF2500at 560.576 kb on - strand, within GFF2500at 560.584 kb on + strand, within GFF2500at 560.585 kb on - strand, within GFF2500at 560.713 kb on + strand, within GFF2500at 560.908 kb on + strandat 560.908 kb on + strandat 560.909 kb on - strandat 560.909 kb on - strandat 560.909 kb on - strandat 560.973 kb on + strandat 561.009 kb on + strandat 561.009 kb on + strandat 561.009 kb on + strandat 561.009 kb on + strandat 561.010 kb on - strandat 561.010 kb on - strandat 561.031 kb on + strandat 561.032 kb on - strandat 561.063 kb on + strandat 561.063 kb on + strandat 561.063 kb on + strandat 561.064 kb on - strandat 561.064 kb on - strandat 561.178 kb on + strandat 561.195 kb on + strand, within GFF2501at 561.195 kb on + strand, within GFF2501at 561.195 kb on + strand, within GFF2501at 561.195 kb on + strand, within GFF2501at 561.195 kb on + strand, within GFF2501at 561.196 kb on - strand, within GFF2501at 561.217 kb on + strand, within GFF2501at 561.217 kb on + strand, within GFF2501at 561.217 kb on + strand, within GFF2501at 561.218 kb on - strand, within GFF2501at 561.267 kb on + strand, within GFF2501at 561.267 kb on + strand, within GFF2501at 561.268 kb on - strand, within GFF2501at 561.268 kb on - strand, within GFF2501at 561.268 kb on - strand, within GFF2501at 561.363 kb on + strand, within GFF2501at 561.432 kb on + strand, within GFF2501at 561.433 kb on - strand, within GFF2501at 561.433 kb on - strand, within GFF2501at 561.434 kb on + strand, within GFF2501at 561.434 kb on + strand, within GFF2501at 561.435 kb on - strand, within GFF2501at 561.497 kb on - strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.568 kb on - strand, within GFF2501at 561.755 kb on + strand, within GFF2501at 561.755 kb on + strand, within GFF2501at 561.755 kb on + strand, within GFF2501at 561.756 kb on - strand, within GFF2501at 561.810 kb on + strand, within GFF2501at 561.810 kb on + strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.835 kb on + strand, within GFF2501at 561.835 kb on + strand, within GFF2501at 561.836 kb on - strand, within GFF2501at 561.836 kb on - strand, within GFF2501at 561.836 kb on - strand, within GFF2501at 561.855 kb on + strand, within GFF2501at 561.856 kb on - strand, within GFF2501at 561.864 kb on + strand, within GFF2501at 561.864 kb on + strand, within GFF2501at 561.864 kb on + strand, within GFF2501at 561.865 kb on - strand, within GFF2501at 561.865 kb on - strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.964 kb on + strand, within GFF2501at 561.964 kb on + strand, within GFF2501at 561.964 kb on + strand, within GFF2501at 561.964 kb on + strand, within GFF2501at 561.964 kb on + strand, within GFF2501at 561.964 kb on + strand, within GFF2501at 561.964 kb on + strand, within GFF2501at 561.965 kb on - strand, within GFF2501at 561.965 kb on - strand, within GFF2501at 561.965 kb on - strand, within GFF2501at 561.965 kb on - strand, within GFF2501at 561.965 kb on - strand, within GFF2501at 561.984 kb on + strand, within GFF2501at 561.985 kb on - strand, within GFF2501at 561.985 kb on - strand, within GFF2501at 561.985 kb on - strand, within GFF2501at 562.060 kb on + strand, within GFF2501at 562.060 kb on + strand, within GFF2501at 562.060 kb on + strand, within GFF2501at 562.060 kb on + strand, within GFF2501at 562.061 kb on - strand, within GFF2501at 562.061 kb on - strand, within GFF2501at 562.069 kb on + strand, within GFF2501at 562.161 kb on + strand, within GFF2501at 562.162 kb on - strand, within GFF2501at 562.164 kb on + strand, within GFF2501at 562.164 kb on + strand, within GFF2501at 562.165 kb on - strand, within GFF2501at 562.165 kb on - strand, within GFF2501at 562.206 kb on + strand, within GFF2501at 562.206 kb on + strand, within GFF2501at 562.206 kb on + strand, within GFF2501at 562.206 kb on + strand, within GFF2501at 562.207 kb on - strand, within GFF2501at 562.232 kb on + strand, within GFF2501at 562.233 kb on - strand, within GFF2501at 562.233 kb on - strand, within GFF2501at 562.267 kb on - strand, within GFF2501at 562.324 kb on - strand, within GFF2501at 562.403 kb on + strand, within GFF2501at 562.403 kb on + strand, within GFF2501at 562.404 kb on - strand, within GFF2501at 562.404 kb on - strand, within GFF2501at 562.404 kb on - strand, within GFF2501at 562.422 kb on + strand, within GFF2501at 562.423 kb on - strand, within GFF2501at 562.470 kb on + strand, within GFF2501at 562.470 kb on + strand, within GFF2501at 562.470 kb on + strand, within GFF2501at 562.471 kb on - strand, within GFF2501at 562.471 kb on - strand, within GFF2501at 562.471 kb on - strand, within GFF2501at 562.498 kb on - strand, within GFF2501at 562.498 kb on - strand, within GFF2501at 562.498 kb on - strand, within GFF2501at 562.500 kb on + strand, within GFF2501at 562.501 kb on - strand, within GFF2501at 562.501 kb on - strand, within GFF2501at 562.501 kb on - strand, within GFF2501at 562.614 kb on + strand, within GFF2501at 562.614 kb on + strand, within GFF2501at 562.614 kb on + strand, within GFF2501at 562.615 kb on - strand, within GFF2501at 562.615 kb on - strand, within GFF2501at 562.615 kb on - strand, within GFF2501at 562.712 kb on + strand, within GFF2501at 562.860 kb on + strandat 562.860 kb on + strandat 562.861 kb on - strandat 562.861 kb on - strandat 562.861 kb on - strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.911 kb on + strandat 562.912 kb on - strandat 562.912 kb on - strandat 562.912 kb on - strandat 562.912 kb on - strandat 562.912 kb on - strandat 562.912 kb on - strandat 562.992 kb on + strandat 562.993 kb on - strandat 563.046 kb on + strandat 563.046 kb on + strandat 563.046 kb on + strandat 563.047 kb on - strandat 563.047 kb on - strandat 563.047 kb on - strandat 563.047 kb on - strandat 563.047 kb on - strandat 563.178 kb on + strand, within GFF2502at 563.178 kb on + strand, within GFF2502at 563.178 kb on + strand, within GFF2502at 563.179 kb on - strand, within GFF2502at 563.179 kb on - strand, within GFF2502at 563.179 kb on - strand, within GFF2502at 563.232 kb on - strand, within GFF2502at 563.232 kb on - strand, within GFF2502at 563.250 kb on + strand, within GFF2502at 563.250 kb on + strand, within GFF2502at 563.250 kb on + strand, within GFF2502at 563.250 kb on + strand, within GFF2502at 563.251 kb on - strand, within GFF2502at 563.251 kb on - strand, within GFF2502at 563.251 kb on - strand, within GFF2502at 563.251 kb on - strand, within GFF2502at 563.251 kb on - strand, within GFF2502at 563.251 kb on - strand, within GFF2502at 563.251 kb on - strand, within GFF2502at 563.251 kb on - strand, within GFF2502at 563.415 kb on + strand, within GFF2502at 563.415 kb on + strand, within GFF2502at 563.416 kb on - strand, within GFF2502at 563.416 kb on - strand, within GFF2502at 563.416 kb on - strand, within GFF2502at 563.416 kb on - strand, within GFF2502at 563.550 kb on + strand, within GFF2502at 563.550 kb on + strand, within GFF2502at 563.752 kb on + strand, within GFF2502at 563.753 kb on - strand, within GFF2502at 563.806 kb on - strand, within GFF2502at 563.851 kb on - strand, within GFF2502at 563.859 kb on + strand, within GFF2502at 563.859 kb on + strand, within GFF2502at 563.859 kb on + strand, within GFF2502at 563.860 kb on - strand, within GFF2502at 563.860 kb on - strand, within GFF2502at 563.860 kb on - strand, within GFF2502at 563.860 kb on - strand, within GFF2502

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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560,081 + GFF2499 0.54 -0.2
560,081 + GFF2499 0.54 -0.1
560,081 + GFF2499 0.54 -0.9
560,081 + GFF2499 0.54 -0.4
560,081 + GFF2499 0.54 -0.2
560,082 - GFF2499 0.55 -0.5
560,082 - GFF2499 0.55 -0.4
560,082 - GFF2499 0.55 -0.2
560,082 - GFF2499 0.55 -0.3
560,144 + GFF2499 0.62 +0.3
560,145 - GFF2499 0.62 -1.4
560,145 - GFF2499 0.62 +0.1
560,145 - GFF2499 0.62 -0.7
560,180 + GFF2499 0.66 +0.6
560,181 - GFF2499 0.66 +0.3
560,181 - GFF2499 0.66 +1.7
560,201 + GFF2499 0.68 -0.1
560,201 + GFF2499 0.68 -0.1
560,202 - GFF2499 0.68 -1.0
560,202 - GFF2499 0.68 -0.2
560,294 + GFF2499 0.79 +0.5
560,294 + GFF2499 0.79 +1.1
560,295 - GFF2499 0.79 +0.3
560,295 - GFF2499 0.79 +0.9
560,295 - GFF2499 0.79 -0.2
560,295 - GFF2499 0.79 -0.2
560,315 + GFF2499 0.81 +0.3
560,315 + GFF2499 0.81 +0.3
560,316 - GFF2499 0.81 -0.8
560,316 - GFF2499 0.81 -0.7
560,438 + -0.2
560,439 - +0.1
560,456 + -0.7
560,457 - -1.0
560,457 - +0.8
560,575 + GFF2500 0.23 -0.3
560,575 + GFF2500 0.23 -0.6
560,576 - GFF2500 0.23 +0.1
560,584 + GFF2500 0.25 +0.3
560,585 - GFF2500 0.25 -0.7
560,713 + GFF2500 0.54 +0.7
560,908 + +0.3
560,908 + -0.4
560,909 - +1.4
560,909 - -0.5
560,909 - +0.2
560,973 + +0.1
561,009 + +0.1
561,009 + +1.1
561,009 + -1.2
561,009 + -0.7
561,010 - -0.0
561,010 - -1.3
561,031 + +0.2
561,032 - -1.8
561,063 + +0.5
561,063 + -0.7
561,063 + +1.1
561,064 - -0.2
561,064 - -0.8
561,178 + +0.1
561,195 + GFF2501 0.10 +0.4
561,195 + GFF2501 0.10 -0.4
561,195 + GFF2501 0.10 -0.5
561,195 + GFF2501 0.10 +0.6
561,195 + GFF2501 0.10 -0.4
561,196 - GFF2501 0.10 -0.7
561,217 + GFF2501 0.11 -0.3
561,217 + GFF2501 0.11 -0.7
561,217 + GFF2501 0.11 +0.7
561,218 - GFF2501 0.11 -0.0
561,267 + GFF2501 0.14 -0.1
561,267 + GFF2501 0.14 +0.5
561,268 - GFF2501 0.14 -1.7
561,268 - GFF2501 0.14 -0.3
561,268 - GFF2501 0.14 -1.0
561,363 + GFF2501 0.19 +0.3
561,432 + GFF2501 0.22 -1.0
561,433 - GFF2501 0.22 -1.4
561,433 - GFF2501 0.22 -0.0
561,434 + GFF2501 0.22 -0.2
561,434 + GFF2501 0.22 -0.3
561,435 - GFF2501 0.22 -1.4
561,497 - GFF2501 0.25 -0.9
561,567 + GFF2501 0.29 -1.8
561,567 + GFF2501 0.29 -0.9
561,567 + GFF2501 0.29 +0.6
561,567 + GFF2501 0.29 -0.5
561,567 + GFF2501 0.29 +0.5
561,568 - GFF2501 0.29 -0.3
561,755 + GFF2501 0.39 -0.1
561,755 + GFF2501 0.39 -0.5
561,755 + GFF2501 0.39 -0.7
561,756 - GFF2501 0.39 -1.1
561,810 + GFF2501 0.41 -1.0
561,810 + GFF2501 0.41 -0.7
561,811 - GFF2501 0.41 -1.7
561,811 - GFF2501 0.41 +2.1
561,811 - GFF2501 0.41 +0.5
561,811 - GFF2501 0.41 +3.1
561,811 - GFF2501 0.41 -0.8
561,835 + GFF2501 0.43 -0.3
561,835 + GFF2501 0.43 +0.5
561,836 - GFF2501 0.43 +0.7
561,836 - GFF2501 0.43 -1.1
561,836 - GFF2501 0.43 -0.9
561,855 + GFF2501 0.44 -0.5
561,856 - GFF2501 0.44 +0.1
561,864 + GFF2501 0.44 -0.3
561,864 + GFF2501 0.44 +0.5
561,864 + GFF2501 0.44 +0.1
561,865 - GFF2501 0.44 -0.5
561,865 - GFF2501 0.44 -1.0
561,891 + GFF2501 0.45 -0.5
561,891 + GFF2501 0.45 +3.1
561,891 + GFF2501 0.45 +0.2
561,891 + GFF2501 0.45 +0.5
561,891 + GFF2501 0.45 -2.8
561,891 + GFF2501 0.45 -0.1
561,892 - GFF2501 0.46 -0.0
561,892 - GFF2501 0.46 -0.9
561,892 - GFF2501 0.46 +0.5
561,892 - GFF2501 0.46 -1.2
561,892 - GFF2501 0.46 +0.6
561,892 - GFF2501 0.46 -1.3
561,964 + GFF2501 0.49 -0.9
561,964 + GFF2501 0.49 -1.8
561,964 + GFF2501 0.49 +0.7
561,964 + GFF2501 0.49 -0.7
561,964 + GFF2501 0.49 -0.2
561,964 + GFF2501 0.49 +1.5
561,964 + GFF2501 0.49 -1.0
561,965 - GFF2501 0.49 -0.2
561,965 - GFF2501 0.49 -2.1
561,965 - GFF2501 0.49 -0.5
561,965 - GFF2501 0.49 -1.2
561,965 - GFF2501 0.49 -0.8
561,984 + GFF2501 0.50 -0.7
561,985 - GFF2501 0.50 -1.5
561,985 - GFF2501 0.50 -0.4
561,985 - GFF2501 0.50 -1.1
562,060 + GFF2501 0.54 -0.3
562,060 + GFF2501 0.54 -1.7
562,060 + GFF2501 0.54 -0.2
562,060 + GFF2501 0.54 -2.2
562,061 - GFF2501 0.54 +2.1
562,061 - GFF2501 0.54 -0.2
562,069 + GFF2501 0.55 +1.3
562,161 + GFF2501 0.59 -0.9
562,162 - GFF2501 0.59 +2.6
562,164 + GFF2501 0.59 +0.3
562,164 + GFF2501 0.59 -0.6
562,165 - GFF2501 0.59 +0.7
562,165 - GFF2501 0.59 -0.3
562,206 + GFF2501 0.62 +0.5
562,206 + GFF2501 0.62 +1.4
562,206 + GFF2501 0.62 +0.2
562,206 + GFF2501 0.62 -0.7
562,207 - GFF2501 0.62 -0.3
562,232 + GFF2501 0.63 -0.1
562,233 - GFF2501 0.63 +0.4
562,233 - GFF2501 0.63 -1.0
562,267 - GFF2501 0.65 -1.9
562,324 - GFF2501 0.68 -0.4
562,403 + GFF2501 0.72 -0.8
562,403 + GFF2501 0.72 +1.1
562,404 - GFF2501 0.72 +1.3
562,404 - GFF2501 0.72 -0.8
562,404 - GFF2501 0.72 -0.3
562,422 + GFF2501 0.73 -0.3
562,423 - GFF2501 0.73 -1.4
562,470 + GFF2501 0.75 +1.1
562,470 + GFF2501 0.75 -1.0
562,470 + GFF2501 0.75 +0.4
562,471 - GFF2501 0.75 -0.7
562,471 - GFF2501 0.75 -0.6
562,471 - GFF2501 0.75 +1.5
562,498 - GFF2501 0.76 -1.2
562,498 - GFF2501 0.76 +0.1
562,498 - GFF2501 0.76 +0.8
562,500 + GFF2501 0.76 -0.7
562,501 - GFF2501 0.77 +0.3
562,501 - GFF2501 0.77 +0.4
562,501 - GFF2501 0.77 -0.5
562,614 + GFF2501 0.82 -0.2
562,614 + GFF2501 0.82 -0.4
562,614 + GFF2501 0.82 -2.1
562,615 - GFF2501 0.82 +0.1
562,615 - GFF2501 0.82 -1.9
562,615 - GFF2501 0.82 -0.3
562,712 + GFF2501 0.87 +0.1
562,860 + -1.4
562,860 + +4.1
562,861 - -0.5
562,861 - +0.1
562,861 - +2.6
562,911 + +0.0
562,911 + +1.5
562,911 + -0.9
562,911 + +0.1
562,911 + -0.1
562,911 + -0.7
562,911 + +1.1
562,911 + -0.1
562,911 + +0.3
562,911 + -0.8
562,911 + -1.7
562,911 + +0.1
562,911 + -0.3
562,912 - -1.0
562,912 - -0.6
562,912 - +0.4
562,912 - +0.7
562,912 - -1.1
562,912 - -0.8
562,992 + -0.9
562,993 - -0.3
563,046 + -0.3
563,046 + +0.9
563,046 + +0.6
563,047 - -1.3
563,047 - -0.1
563,047 - -0.2
563,047 - +0.5
563,047 - -0.9
563,178 + GFF2502 0.10 -0.2
563,178 + GFF2502 0.10 +0.6
563,178 + GFF2502 0.10 -0.9
563,179 - GFF2502 0.10 -0.8
563,179 - GFF2502 0.10 +0.2
563,179 - GFF2502 0.10 -1.1
563,232 - GFF2502 0.13 -0.6
563,232 - GFF2502 0.13 -0.7
563,250 + GFF2502 0.14 +0.3
563,250 + GFF2502 0.14 +0.1
563,250 + GFF2502 0.14 +0.1
563,250 + GFF2502 0.14 -0.9
563,251 - GFF2502 0.14 -0.2
563,251 - GFF2502 0.14 -0.8
563,251 - GFF2502 0.14 +0.1
563,251 - GFF2502 0.14 -0.2
563,251 - GFF2502 0.14 +0.2
563,251 - GFF2502 0.14 +0.3
563,251 - GFF2502 0.14 -1.9
563,251 - GFF2502 0.14 +0.7
563,415 + GFF2502 0.22 -0.6
563,415 + GFF2502 0.22 -0.6
563,416 - GFF2502 0.22 -0.9
563,416 - GFF2502 0.22 -0.3
563,416 - GFF2502 0.22 +0.1
563,416 - GFF2502 0.22 +0.4
563,550 + GFF2502 0.29 -1.9
563,550 + GFF2502 0.29 +0.6
563,752 + GFF2502 0.39 -0.9
563,753 - GFF2502 0.39 +0.7
563,806 - GFF2502 0.42 -0.8
563,851 - GFF2502 0.44 -0.1
563,859 + GFF2502 0.45 -0.1
563,859 + GFF2502 0.45 -0.3
563,859 + GFF2502 0.45 +0.1
563,860 - GFF2502 0.45 +1.1
563,860 - GFF2502 0.45 +1.1
563,860 - GFF2502 0.45 +0.9
563,860 - GFF2502 0.45 +0.2

Or see this region's nucleotide sequence