Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2429 and GFF2430 are separated by 22 nucleotides GFF2430 and GFF2431 are separated by 158 nucleotides GFF2431 and GFF2432 overlap by 4 nucleotides
GFF2429 - putative membrane protein, at 479,771 to 480,595
GFF2429
GFF2430 - Protein secretion chaperonin CsaA, at 480,618 to 480,977
GFF2430
GFF2431 - RNA polymerase ECF-type sigma factor, at 481,136 to 481,663
GFF2431
GFF2432 - Fe2+-dicitrate sensor, membrane component, at 481,660 to 482,652
GFF2432
Position (kb) 481
482 Strain fitness (log2 ratio) -2
-1
0
1 at 480.182 kb on + strand, within GFF2429 at 480.182 kb on + strand, within GFF2429 at 480.183 kb on - strand, within GFF2429 at 480.243 kb on + strand, within GFF2429 at 480.302 kb on + strand, within GFF2429 at 480.575 kb on + strand at 480.576 kb on - strand at 480.642 kb on + strand at 480.642 kb on + strand at 480.642 kb on + strand at 480.643 kb on - strand at 480.790 kb on + strand, within GFF2430 at 480.856 kb on + strand, within GFF2430 at 480.856 kb on + strand, within GFF2430 at 480.856 kb on + strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 481.015 kb on + strand at 481.015 kb on + strand at 481.015 kb on + strand at 481.015 kb on + strand at 481.016 kb on - strand at 481.016 kb on - strand at 481.082 kb on - strand at 481.181 kb on + strand at 481.181 kb on + strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.343 kb on + strand, within GFF2431 at 481.344 kb on - strand, within GFF2431 at 481.344 kb on - strand, within GFF2431 at 481.383 kb on - strand, within GFF2431 at 481.409 kb on + strand, within GFF2431 at 481.410 kb on - strand, within GFF2431 at 481.568 kb on + strand, within GFF2431 at 481.619 kb on + strand at 481.619 kb on + strand at 481.620 kb on - strand at 482.092 kb on + strand, within GFF2432 at 482.093 kb on - strand, within GFF2432 at 482.609 kb on - strand at 482.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 480,182 + GFF2429 0.50 +1.1 480,182 + GFF2429 0.50 -0.4 480,183 - GFF2429 0.50 +0.9 480,243 + GFF2429 0.57 +1.3 480,302 + GFF2429 0.64 -0.5 480,575 + -1.5 480,576 - +1.0 480,642 + +0.2 480,642 + -0.1 480,642 + +0.2 480,643 - +0.5 480,790 + GFF2430 0.48 +0.3 480,856 + GFF2430 0.66 -0.6 480,856 + GFF2430 0.66 -0.2 480,856 + GFF2430 0.66 -0.4 480,857 - GFF2430 0.66 +0.3 480,857 - GFF2430 0.66 +0.4 480,857 - GFF2430 0.66 -0.5 480,857 - GFF2430 0.66 -0.1 480,857 - GFF2430 0.66 +0.8 481,015 + -0.0 481,015 + -1.3 481,015 + -0.1 481,015 + -0.5 481,016 - -0.2 481,016 - -0.5 481,082 - -0.3 481,181 + -0.0 481,181 + -0.2 481,182 - +1.5 481,182 - -0.4 481,182 - -0.1 481,182 - -1.0 481,182 - -0.6 481,182 - +0.3 481,343 + GFF2431 0.39 +0.3 481,344 - GFF2431 0.39 -0.2 481,344 - GFF2431 0.39 -0.3 481,383 - GFF2431 0.47 -0.5 481,409 + GFF2431 0.52 -1.8 481,410 - GFF2431 0.52 -0.6 481,568 + GFF2431 0.82 -1.1 481,619 + +1.2 481,619 + +1.0 481,620 - -0.1 482,092 + GFF2432 0.44 -0.2 482,093 - GFF2432 0.44 +0.8 482,609 - +0.7 482,621 - +0.1
Or see this region's nucleotide sequence