Strain Fitness in Variovorax sp. SCN45 around GFF234

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF232 and GFF233 are separated by 206 nucleotidesGFF233 and GFF234 are separated by 37 nucleotidesGFF234 and GFF235 are separated by 311 nucleotidesGFF235 and GFF236 are separated by 100 nucleotides GFF232 - Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18), at 260,333 to 262,639 GFF232 GFF233 - Putative activity regulator of membrane protease YbbK, at 262,846 to 263,271 GFF233 GFF234 - Protein QmcA (possibly involved in integral membrane quality control), at 263,309 to 264,238 GFF234 GFF235 - hypothetical protein, at 264,550 to 264,906 GFF235 GFF236 - Two-component transcriptional response regulator receiver domain, at 265,007 to 265,396 GFF236 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 262.338 kb on + strand, within GFF232at 262.338 kb on + strand, within GFF232at 262.339 kb on - strand, within GFF232at 262.339 kb on - strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.344 kb on + strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.345 kb on - strand, within GFF232at 262.509 kb on + strandat 262.510 kb on - strandat 262.510 kb on - strandat 262.683 kb on - strandat 262.683 kb on - strandat 262.683 kb on - strandat 262.683 kb on - strandat 262.697 kb on + strandat 262.766 kb on + strandat 262.766 kb on + strandat 262.767 kb on - strandat 262.767 kb on - strandat 262.772 kb on + strandat 262.918 kb on + strand, within GFF233at 262.918 kb on + strand, within GFF233at 262.918 kb on + strand, within GFF233at 263.038 kb on + strand, within GFF233at 263.038 kb on + strand, within GFF233at 263.039 kb on - strand, within GFF233at 263.269 kb on + strandat 263.269 kb on + strandat 263.270 kb on - strandat 263.270 kb on - strandat 263.284 kb on + strandat 263.284 kb on + strandat 263.285 kb on - strandat 263.420 kb on + strand, within GFF234at 263.420 kb on + strand, within GFF234at 263.420 kb on + strand, within GFF234at 263.420 kb on + strand, within GFF234at 263.420 kb on + strand, within GFF234at 263.421 kb on - strand, within GFF234at 263.480 kb on + strand, within GFF234at 263.480 kb on + strand, within GFF234at 263.481 kb on - strand, within GFF234at 263.481 kb on - strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.573 kb on + strand, within GFF234at 263.574 kb on - strand, within GFF234at 263.574 kb on - strand, within GFF234at 263.607 kb on - strand, within GFF234at 263.607 kb on - strand, within GFF234at 263.607 kb on - strand, within GFF234at 263.607 kb on - strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.621 kb on + strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.622 kb on - strand, within GFF234at 263.781 kb on - strand, within GFF234at 264.113 kb on + strand, within GFF234at 264.114 kb on - strand, within GFF234at 264.114 kb on - strand, within GFF234at 264.248 kb on + strandat 264.248 kb on + strandat 264.248 kb on + strandat 264.248 kb on + strandat 264.248 kb on + strandat 264.248 kb on + strandat 264.249 kb on - strandat 264.249 kb on - strandat 264.371 kb on - strandat 264.507 kb on + strandat 264.507 kb on + strandat 264.507 kb on + strandat 264.507 kb on + strandat 264.508 kb on - strandat 264.508 kb on - strandat 264.508 kb on - strandat 264.508 kb on - strandat 264.508 kb on - strandat 264.508 kb on - strandat 264.508 kb on - strandat 264.508 kb on - strandat 264.508 kb on - strandat 264.508 kb on - strandat 264.523 kb on + strandat 264.939 kb on - strandat 264.950 kb on + strandat 264.950 kb on + strandat 264.951 kb on - strandat 264.975 kb on + strandat 264.975 kb on + strandat 264.975 kb on + strandat 264.975 kb on + strandat 264.976 kb on - strandat 264.976 kb on - strandat 264.976 kb on - strandat 264.976 kb on - strandat 264.976 kb on - strandat 264.980 kb on + strandat 264.980 kb on + strandat 264.980 kb on + strandat 264.981 kb on - strandat 264.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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262,338 + GFF232 0.87 +0.3
262,338 + GFF232 0.87 +1.1
262,339 - GFF232 0.87 +0.1
262,339 - GFF232 0.87 +0.5
262,344 + GFF232 0.87 +0.3
262,344 + GFF232 0.87 -0.2
262,344 + GFF232 0.87 -1.1
262,344 + GFF232 0.87 -0.5
262,344 + GFF232 0.87 -0.5
262,345 - GFF232 0.87 -0.7
262,345 - GFF232 0.87 -0.3
262,345 - GFF232 0.87 +0.8
262,345 - GFF232 0.87 +0.7
262,345 - GFF232 0.87 -2.5
262,345 - GFF232 0.87 -0.2
262,345 - GFF232 0.87 -0.9
262,345 - GFF232 0.87 +0.5
262,509 + -0.9
262,510 - -0.2
262,510 - -0.4
262,683 - +0.6
262,683 - -0.0
262,683 - -0.7
262,683 - -0.2
262,697 + -1.0
262,766 + +1.5
262,766 + +0.2
262,767 - +0.2
262,767 - -0.9
262,772 + -0.2
262,918 + GFF233 0.17 -0.2
262,918 + GFF233 0.17 -0.2
262,918 + GFF233 0.17 -1.0
263,038 + GFF233 0.45 -0.0
263,038 + GFF233 0.45 -0.2
263,039 - GFF233 0.45 +0.5
263,269 + -1.4
263,269 + -0.7
263,270 - +0.4
263,270 - +0.1
263,284 + -0.6
263,284 + +0.8
263,285 - -0.2
263,420 + GFF234 0.12 +0.5
263,420 + GFF234 0.12 -0.7
263,420 + GFF234 0.12 +0.5
263,420 + GFF234 0.12 +0.1
263,420 + GFF234 0.12 -1.4
263,421 - GFF234 0.12 +1.1
263,480 + GFF234 0.18 -0.9
263,480 + GFF234 0.18 -1.8
263,481 - GFF234 0.18 +0.8
263,481 - GFF234 0.18 +0.1
263,573 + GFF234 0.28 -1.0
263,573 + GFF234 0.28 +0.8
263,573 + GFF234 0.28 -0.5
263,573 + GFF234 0.28 +0.2
263,573 + GFF234 0.28 +0.1
263,573 + GFF234 0.28 -0.7
263,574 - GFF234 0.28 -0.5
263,574 - GFF234 0.28 +1.5
263,607 - GFF234 0.32 +0.2
263,607 - GFF234 0.32 -0.1
263,607 - GFF234 0.32 -1.9
263,607 - GFF234 0.32 +0.1
263,621 + GFF234 0.34 +0.1
263,621 + GFF234 0.34 -0.3
263,621 + GFF234 0.34 -0.6
263,621 + GFF234 0.34 +0.5
263,621 + GFF234 0.34 +0.5
263,622 - GFF234 0.34 -0.9
263,622 - GFF234 0.34 -1.2
263,622 - GFF234 0.34 -0.5
263,622 - GFF234 0.34 -0.9
263,622 - GFF234 0.34 -2.0
263,622 - GFF234 0.34 +0.5
263,622 - GFF234 0.34 -1.7
263,622 - GFF234 0.34 -0.5
263,622 - GFF234 0.34 -0.6
263,622 - GFF234 0.34 -0.8
263,781 - GFF234 0.51 -0.3
264,113 + GFF234 0.86 -1.0
264,114 - GFF234 0.87 -1.7
264,114 - GFF234 0.87 +0.1
264,248 + +0.2
264,248 + -0.9
264,248 + -0.5
264,248 + +1.3
264,248 + +0.1
264,248 + -0.1
264,249 - +0.9
264,249 - +0.0
264,371 - -0.0
264,507 + +0.3
264,507 + -0.4
264,507 + -0.1
264,507 + +0.7
264,508 - -1.6
264,508 - +0.5
264,508 - +0.4
264,508 - +0.7
264,508 - -0.1
264,508 - +0.0
264,508 - -1.3
264,508 - +4.4
264,508 - +1.1
264,508 - -0.2
264,523 + -0.5
264,939 - -0.7
264,950 + +4.6
264,950 + +0.3
264,951 - +0.7
264,975 + -1.1
264,975 + +0.5
264,975 + -0.6
264,975 + +0.4
264,976 - +0.8
264,976 - +1.1
264,976 - +0.3
264,976 - +0.2
264,976 - +0.8
264,980 + -0.5
264,980 + -0.3
264,980 + -0.2
264,981 - -0.0
264,981 - +1.2

Or see this region's nucleotide sequence