Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2334 and GFF2335 are separated by 79 nucleotides GFF2335 and GFF2336 overlap by 4 nucleotides GFF2336 and GFF2337 are separated by 141 nucleotides
GFF2334 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 384,173 to 385,363
GFF2334
GFF2335 - Lactoylglutathione lyase and related lyases, at 385,443 to 385,859
GFF2335
GFF2336 - Transcriptional regulator, AraC family, at 385,856 to 386,329
GFF2336
GFF2337 - hypothetical protein, at 386,471 to 388,066
GFF2337
Position (kb) 385
386
387 Strain fitness (log2 ratio) -1
0
1 at 385.182 kb on + strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.193 kb on + strand, within GFF2334 at 385.292 kb on + strand at 385.357 kb on + strand at 385.358 kb on - strand at 385.358 kb on - strand at 385.358 kb on - strand at 385.576 kb on + strand, within GFF2335 at 385.576 kb on + strand, within GFF2335 at 385.577 kb on - strand, within GFF2335 at 385.577 kb on - strand, within GFF2335 at 385.745 kb on - strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.796 kb on - strand, within GFF2335 at 385.796 kb on - strand, within GFF2335 at 385.796 kb on - strand, within GFF2335 at 385.828 kb on + strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.836 kb on + strand at 385.837 kb on - strand at 385.837 kb on - strand at 385.847 kb on + strand at 385.847 kb on + strand at 386.163 kb on + strand, within GFF2336 at 386.231 kb on + strand, within GFF2336 at 386.424 kb on + strand at 386.424 kb on + strand at 386.425 kb on - strand at 386.425 kb on - strand at 386.425 kb on - strand at 386.493 kb on + strand at 386.493 kb on + strand at 386.494 kb on - strand at 386.495 kb on + strand at 386.495 kb on + strand at 386.496 kb on - strand at 386.496 kb on - strand at 386.496 kb on - strand at 386.496 kb on - strand at 386.709 kb on + strand, within GFF2337 at 386.710 kb on - strand, within GFF2337 at 386.778 kb on + strand, within GFF2337 at 386.823 kb on + strand, within GFF2337 at 386.823 kb on + strand, within GFF2337 at 386.824 kb on - strand, within GFF2337 at 386.824 kb on - strand, within GFF2337 at 386.829 kb on + strand, within GFF2337 at 386.830 kb on - strand, within GFF2337 at 386.982 kb on + strand, within GFF2337 at 386.982 kb on + strand, within GFF2337 at 386.982 kb on + strand, within GFF2337 at 386.982 kb on + strand, within GFF2337 at 386.982 kb on + strand, within GFF2337 at 386.983 kb on - strand, within GFF2337 at 386.983 kb on - strand, within GFF2337 at 386.983 kb on - strand, within GFF2337 at 386.983 kb on - strand, within GFF2337 at 387.147 kb on + strand, within GFF2337 at 387.148 kb on - strand, within GFF2337 at 387.148 kb on - strand, within GFF2337 at 387.148 kb on - strand, within GFF2337 at 387.186 kb on + strand, within GFF2337
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 385,182 + GFF2334 0.85 -0.2 385,183 - GFF2334 0.85 +1.2 385,183 - GFF2334 0.85 -0.2 385,183 - GFF2334 0.85 +0.3 385,183 - GFF2334 0.85 +1.6 385,193 + GFF2334 0.86 +0.0 385,292 + +0.2 385,357 + -0.4 385,358 - -0.5 385,358 - -1.0 385,358 - +0.5 385,576 + GFF2335 0.32 +0.0 385,576 + GFF2335 0.32 -0.1 385,577 - GFF2335 0.32 +0.3 385,577 - GFF2335 0.32 -0.3 385,745 - GFF2335 0.72 -0.2 385,795 + GFF2335 0.84 -1.0 385,795 + GFF2335 0.84 -0.1 385,795 + GFF2335 0.84 +0.1 385,795 + GFF2335 0.84 +0.1 385,795 + GFF2335 0.84 -1.0 385,795 + GFF2335 0.84 +0.1 385,795 + GFF2335 0.84 +1.5 385,796 - GFF2335 0.85 -0.5 385,796 - GFF2335 0.85 +0.1 385,796 - GFF2335 0.85 +0.8 385,828 + +0.5 385,829 - +0.1 385,829 - +0.5 385,829 - -0.0 385,829 - -0.8 385,829 - -0.4 385,829 - +0.3 385,829 - +1.2 385,836 + +0.2 385,837 - +0.6 385,837 - +1.6 385,847 + +0.5 385,847 + +0.3 386,163 + GFF2336 0.65 -0.0 386,231 + GFF2336 0.79 -1.1 386,424 + -1.0 386,424 + +0.0 386,425 - -0.8 386,425 - -0.3 386,425 - +1.2 386,493 + -0.1 386,493 + -0.1 386,494 - -1.7 386,495 + +0.1 386,495 + +0.0 386,496 - +0.5 386,496 - +0.5 386,496 - +0.3 386,496 - -0.3 386,709 + GFF2337 0.15 +0.3 386,710 - GFF2337 0.15 -0.5 386,778 + GFF2337 0.19 +0.9 386,823 + GFF2337 0.22 +1.2 386,823 + GFF2337 0.22 +0.1 386,824 - GFF2337 0.22 +0.3 386,824 - GFF2337 0.22 -1.3 386,829 + GFF2337 0.22 -0.3 386,830 - GFF2337 0.22 +0.1 386,982 + GFF2337 0.32 -0.4 386,982 + GFF2337 0.32 +0.7 386,982 + GFF2337 0.32 -0.5 386,982 + GFF2337 0.32 -0.2 386,982 + GFF2337 0.32 -0.2 386,983 - GFF2337 0.32 +0.3 386,983 - GFF2337 0.32 -0.1 386,983 - GFF2337 0.32 -0.4 386,983 - GFF2337 0.32 -1.3 387,147 + GFF2337 0.42 -0.6 387,148 - GFF2337 0.42 -0.1 387,148 - GFF2337 0.42 -0.8 387,148 - GFF2337 0.42 -0.9 387,186 + GFF2337 0.45 -0.5
Or see this region's nucleotide sequence