Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2280 and GFF2281 are separated by 56 nucleotides GFF2281 and GFF2282 are separated by 22 nucleotides GFF2282 and GFF2283 overlap by 4 nucleotides GFF2283 and GFF2284 are separated by 106 nucleotides
GFF2280 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 334,785 to 335,921
GFF2280
GFF2281 - Short-chain dehydrogenase/reductase SDR, at 335,978 to 336,754
GFF2281
GFF2282 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 336,777 to 338,630
GFF2282
GFF2283 - Enoyl-CoA hydratase (EC 4.2.1.17), at 338,627 to 339,400
GFF2283
GFF2284 - FIG00538168: hypothetical protein, at 339,507 to 340,385
GFF2284
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.935 kb on + strand at 335.936 kb on - strand at 335.936 kb on - strand at 335.936 kb on - strand at 336.402 kb on + strand, within GFF2281 at 336.402 kb on + strand, within GFF2281 at 336.403 kb on - strand, within GFF2281 at 337.135 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.176 kb on + strand, within GFF2282 at 337.177 kb on - strand, within GFF2282 at 337.468 kb on + strand, within GFF2282 at 337.594 kb on + strand, within GFF2282 at 337.595 kb on - strand, within GFF2282 at 337.693 kb on + strand, within GFF2282 at 337.693 kb on + strand, within GFF2282 at 337.693 kb on + strand, within GFF2282 at 337.694 kb on - strand, within GFF2282 at 337.694 kb on - strand, within GFF2282 at 337.694 kb on - strand, within GFF2282 at 337.694 kb on - strand, within GFF2282 at 337.694 kb on - strand, within GFF2282 at 337.771 kb on + strand, within GFF2282 at 337.771 kb on + strand, within GFF2282 at 337.772 kb on - strand, within GFF2282 at 338.254 kb on + strand, within GFF2282 at 338.254 kb on + strand, within GFF2282 at 338.269 kb on + strand, within GFF2282 at 338.401 kb on + strand, within GFF2282 at 338.491 kb on + strand at 338.551 kb on + strand at 338.552 kb on - strand at 338.787 kb on + strand, within GFF2283 at 338.787 kb on + strand, within GFF2283 at 338.868 kb on + strand, within GFF2283 at 338.868 kb on + strand, within GFF2283 at 338.868 kb on + strand, within GFF2283 at 338.868 kb on + strand, within GFF2283 at 338.869 kb on - strand, within GFF2283 at 338.907 kb on + strand, within GFF2283 at 338.908 kb on - strand, within GFF2283 at 339.022 kb on - strand, within GFF2283 at 339.022 kb on - strand, within GFF2283 at 339.022 kb on - strand, within GFF2283 at 339.429 kb on - strand at 339.583 kb on - strand at 339.583 kb on - strand at 339.583 kb on - strand at 339.595 kb on - strand, within GFF2284 at 339.595 kb on - strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.616 kb on - strand, within GFF2284
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 335,935 + -0.6 335,936 - -0.1 335,936 - +0.4 335,936 - -0.9 336,402 + GFF2281 0.55 +0.3 336,402 + GFF2281 0.55 -0.7 336,403 - GFF2281 0.55 -0.2 337,135 + GFF2282 0.19 -0.5 337,176 + GFF2282 0.22 -0.7 337,176 + GFF2282 0.22 +0.5 337,176 + GFF2282 0.22 -1.5 337,176 + GFF2282 0.22 -1.1 337,176 + GFF2282 0.22 -0.6 337,177 - GFF2282 0.22 -0.6 337,468 + GFF2282 0.37 +0.1 337,594 + GFF2282 0.44 -0.9 337,595 - GFF2282 0.44 -0.5 337,693 + GFF2282 0.49 -1.0 337,693 + GFF2282 0.49 -0.5 337,693 + GFF2282 0.49 -0.5 337,694 - GFF2282 0.49 -0.3 337,694 - GFF2282 0.49 +2.5 337,694 - GFF2282 0.49 -2.4 337,694 - GFF2282 0.49 -1.5 337,694 - GFF2282 0.49 -0.8 337,771 + GFF2282 0.54 +0.3 337,771 + GFF2282 0.54 +1.5 337,772 - GFF2282 0.54 -0.6 338,254 + GFF2282 0.80 -0.7 338,254 + GFF2282 0.80 +2.1 338,269 + GFF2282 0.80 +0.9 338,401 + GFF2282 0.88 +1.2 338,491 + +0.4 338,551 + +0.1 338,552 - -0.1 338,787 + GFF2283 0.21 +0.3 338,787 + GFF2283 0.21 -0.6 338,868 + GFF2283 0.31 +0.2 338,868 + GFF2283 0.31 -0.6 338,868 + GFF2283 0.31 -0.0 338,868 + GFF2283 0.31 -1.0 338,869 - GFF2283 0.31 -0.5 338,907 + GFF2283 0.36 -0.3 338,908 - GFF2283 0.36 -0.2 339,022 - GFF2283 0.51 +1.3 339,022 - GFF2283 0.51 -0.1 339,022 - GFF2283 0.51 +0.3 339,429 - +0.1 339,583 - +0.1 339,583 - -0.3 339,583 - +0.8 339,595 - GFF2284 0.10 +0.7 339,595 - GFF2284 0.10 -0.9 339,615 + GFF2284 0.12 -0.2 339,615 + GFF2284 0.12 -0.4 339,615 + GFF2284 0.12 -0.3 339,615 + GFF2284 0.12 +0.2 339,615 + GFF2284 0.12 -0.8 339,616 - GFF2284 0.12 +0.6 339,616 - GFF2284 0.12 -0.7 339,616 - GFF2284 0.12 -0.4 339,616 - GFF2284 0.12 +0.0
Or see this region's nucleotide sequence