Strain Fitness in Variovorax sp. SCN45 around GFF2276

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2275 and GFF2276 are separated by 20 nucleotidesGFF2276 and GFF2277 are separated by 50 nucleotidesGFF2277 and GFF2278 are separated by 1 nucleotides GFF2275 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 327,605 to 329,350 GFF2275 GFF2276 - Chlorogenate esterase, at 329,371 to 331,110 GFF2276 GFF2277 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,161 to 331,895 GFF2277 GFF2278 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,897 to 333,711 GFF2278 Position (kb) 329 330 331 332Strain fitness (log2 ratio) -2 -1 0 1at 328.420 kb on - strand, within GFF2275at 328.905 kb on + strand, within GFF2275at 328.905 kb on + strand, within GFF2275at 328.905 kb on + strand, within GFF2275at 328.905 kb on + strand, within GFF2275at 328.906 kb on - strand, within GFF2275at 328.906 kb on - strand, within GFF2275at 328.950 kb on + strand, within GFF2275at 328.950 kb on + strand, within GFF2275at 328.950 kb on + strand, within GFF2275at 329.013 kb on + strand, within GFF2275at 329.106 kb on + strand, within GFF2275at 329.107 kb on - strand, within GFF2275at 329.107 kb on - strand, within GFF2275at 329.107 kb on - strand, within GFF2275at 329.344 kb on - strandat 329.372 kb on + strandat 329.373 kb on - strandat 329.429 kb on + strandat 329.429 kb on + strandat 329.429 kb on + strandat 329.430 kb on - strandat 329.430 kb on - strandat 329.651 kb on + strand, within GFF2276at 329.651 kb on + strand, within GFF2276at 329.651 kb on + strand, within GFF2276at 329.652 kb on - strand, within GFF2276at 329.652 kb on - strand, within GFF2276at 329.702 kb on + strand, within GFF2276at 329.703 kb on - strand, within GFF2276at 329.703 kb on - strand, within GFF2276at 329.703 kb on - strand, within GFF2276at 329.753 kb on + strand, within GFF2276at 329.753 kb on + strand, within GFF2276at 329.754 kb on - strand, within GFF2276at 329.991 kb on + strand, within GFF2276at 330.044 kb on + strand, within GFF2276at 330.044 kb on + strand, within GFF2276at 330.044 kb on + strand, within GFF2276at 330.045 kb on - strand, within GFF2276at 330.045 kb on - strand, within GFF2276at 330.045 kb on - strand, within GFF2276at 330.045 kb on - strand, within GFF2276at 330.342 kb on - strand, within GFF2276at 330.342 kb on - strand, within GFF2276at 330.356 kb on + strand, within GFF2276at 330.357 kb on - strand, within GFF2276at 330.420 kb on - strand, within GFF2276at 330.485 kb on + strand, within GFF2276at 330.486 kb on - strand, within GFF2276at 330.510 kb on - strand, within GFF2276at 330.563 kb on + strand, within GFF2276at 330.564 kb on - strand, within GFF2276at 330.743 kb on + strand, within GFF2276at 330.743 kb on + strand, within GFF2276at 330.743 kb on + strand, within GFF2276at 330.743 kb on + strand, within GFF2276at 330.743 kb on + strand, within GFF2276at 330.743 kb on + strand, within GFF2276at 330.744 kb on - strand, within GFF2276at 330.744 kb on - strand, within GFF2276at 330.744 kb on - strand, within GFF2276at 330.798 kb on - strand, within GFF2276at 330.924 kb on - strand, within GFF2276at 330.924 kb on - strand, within GFF2276at 331.189 kb on + strandat 331.189 kb on + strandat 331.189 kb on + strandat 331.189 kb on + strandat 331.190 kb on - strandat 331.190 kb on - strandat 331.190 kb on - strandat 331.190 kb on - strandat 331.190 kb on - strandat 331.190 kb on - strandat 331.267 kb on + strand, within GFF2277at 331.267 kb on + strand, within GFF2277at 331.267 kb on + strand, within GFF2277at 331.268 kb on - strand, within GFF2277at 331.268 kb on - strand, within GFF2277at 331.528 kb on + strand, within GFF2277at 331.528 kb on + strand, within GFF2277at 331.528 kb on + strand, within GFF2277at 331.528 kb on + strand, within GFF2277at 331.529 kb on - strand, within GFF2277at 331.529 kb on - strand, within GFF2277

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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328,420 - GFF2275 0.47 -0.7
328,905 + GFF2275 0.74 -0.4
328,905 + GFF2275 0.74 -0.4
328,905 + GFF2275 0.74 +0.9
328,905 + GFF2275 0.74 -0.9
328,906 - GFF2275 0.75 +0.2
328,906 - GFF2275 0.75 +1.5
328,950 + GFF2275 0.77 -1.1
328,950 + GFF2275 0.77 -0.2
328,950 + GFF2275 0.77 +0.5
329,013 + GFF2275 0.81 +0.5
329,106 + GFF2275 0.86 -0.6
329,107 - GFF2275 0.86 -0.1
329,107 - GFF2275 0.86 -0.3
329,107 - GFF2275 0.86 +0.1
329,344 - +0.5
329,372 + +0.9
329,373 - -0.2
329,429 + +0.1
329,429 + +0.2
329,429 + +1.3
329,430 - -0.6
329,430 - -0.1
329,651 + GFF2276 0.16 -0.2
329,651 + GFF2276 0.16 -0.5
329,651 + GFF2276 0.16 -0.6
329,652 - GFF2276 0.16 -0.4
329,652 - GFF2276 0.16 +0.2
329,702 + GFF2276 0.19 +0.9
329,703 - GFF2276 0.19 -0.0
329,703 - GFF2276 0.19 -0.7
329,703 - GFF2276 0.19 -0.2
329,753 + GFF2276 0.22 -0.1
329,753 + GFF2276 0.22 -1.6
329,754 - GFF2276 0.22 -0.9
329,991 + GFF2276 0.36 +0.2
330,044 + GFF2276 0.39 -0.4
330,044 + GFF2276 0.39 -1.9
330,044 + GFF2276 0.39 -1.2
330,045 - GFF2276 0.39 +0.6
330,045 - GFF2276 0.39 +1.5
330,045 - GFF2276 0.39 -0.4
330,045 - GFF2276 0.39 +0.4
330,342 - GFF2276 0.56 +1.5
330,342 - GFF2276 0.56 -0.7
330,356 + GFF2276 0.57 -2.0
330,357 - GFF2276 0.57 +0.1
330,420 - GFF2276 0.60 -0.4
330,485 + GFF2276 0.64 -0.9
330,486 - GFF2276 0.64 -0.8
330,510 - GFF2276 0.65 +0.2
330,563 + GFF2276 0.69 -1.5
330,564 - GFF2276 0.69 -0.7
330,743 + GFF2276 0.79 -1.2
330,743 + GFF2276 0.79 +1.7
330,743 + GFF2276 0.79 +0.5
330,743 + GFF2276 0.79 +0.7
330,743 + GFF2276 0.79 +0.9
330,743 + GFF2276 0.79 -0.0
330,744 - GFF2276 0.79 -0.1
330,744 - GFF2276 0.79 -0.1
330,744 - GFF2276 0.79 -1.2
330,798 - GFF2276 0.82 -0.6
330,924 - GFF2276 0.89 -0.7
330,924 - GFF2276 0.89 +1.1
331,189 + +0.3
331,189 + +0.5
331,189 + -0.3
331,189 + -0.9
331,190 - -1.0
331,190 - -0.9
331,190 - +1.0
331,190 - -0.9
331,190 - +0.2
331,190 - +0.1
331,267 + GFF2277 0.14 +0.0
331,267 + GFF2277 0.14 -0.8
331,267 + GFF2277 0.14 -0.8
331,268 - GFF2277 0.15 +0.1
331,268 - GFF2277 0.15 -0.5
331,528 + GFF2277 0.50 +0.1
331,528 + GFF2277 0.50 -0.4
331,528 + GFF2277 0.50 +0.1
331,528 + GFF2277 0.50 -0.8
331,529 - GFF2277 0.50 -0.5
331,529 - GFF2277 0.50 -0.4

Or see this region's nucleotide sequence