Strain Fitness in Variovorax sp. SCN45 around GFF2056

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2054 and GFF2055 are separated by 10 nucleotidesGFF2055 and GFF2056 overlap by 4 nucleotidesGFF2056 and GFF2057 are separated by 30 nucleotides GFF2054 - RNA binding methyltransferase FtsJ like, at 103,264 to 104,040 GFF2054 GFF2055 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 104,051 to 104,875 GFF2055 GFF2056 - Septum-associated rare lipoprotein A, at 104,872 to 105,582 GFF2056 GFF2057 - 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266), at 105,613 to 106,578 GFF2057 Position (kb) 104 105 106Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.915 kb on + strand, within GFF2054at 103.915 kb on + strand, within GFF2054at 103.915 kb on + strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 104.038 kb on + strandat 104.038 kb on + strandat 104.038 kb on + strandat 104.039 kb on - strandat 104.039 kb on - strandat 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.385 kb on - strand, within GFF2055at 104.549 kb on + strand, within GFF2055at 104.550 kb on - strand, within GFF2055at 104.550 kb on - strand, within GFF2055at 104.550 kb on - strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.822 kb on + strandat 104.822 kb on + strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 105.080 kb on - strand, within GFF2056at 105.178 kb on + strand, within GFF2056at 105.179 kb on - strand, within GFF2056at 105.179 kb on - strand, within GFF2056at 105.341 kb on - strand, within GFF2056at 105.341 kb on - strand, within GFF2056at 105.580 kb on + strandat 105.580 kb on + strandat 105.580 kb on + strandat 105.580 kb on + strandat 105.581 kb on - strandat 105.581 kb on - strandat 105.581 kb on - strandat 105.710 kb on + strand, within GFF2057at 105.710 kb on + strand, within GFF2057at 105.710 kb on + strand, within GFF2057at 105.711 kb on - strand, within GFF2057at 105.711 kb on - strand, within GFF2057at 105.914 kb on + strand, within GFF2057at 105.914 kb on + strand, within GFF2057at 105.914 kb on + strand, within GFF2057at 105.914 kb on + strand, within GFF2057at 105.914 kb on + strand, within GFF2057at 105.915 kb on - strand, within GFF2057at 105.915 kb on - strand, within GFF2057at 105.915 kb on - strand, within GFF2057at 105.915 kb on - strand, within GFF2057at 105.915 kb on - strand, within GFF2057at 105.915 kb on - strand, within GFF2057at 105.915 kb on - strand, within GFF2057at 105.971 kb on + strand, within GFF2057at 105.972 kb on - strand, within GFF2057at 105.989 kb on + strand, within GFF2057at 105.989 kb on + strand, within GFF2057at 105.989 kb on + strand, within GFF2057at 105.989 kb on + strand, within GFF2057at 105.990 kb on - strand, within GFF2057at 105.990 kb on - strand, within GFF2057at 105.990 kb on - strand, within GFF2057at 105.990 kb on - strand, within GFF2057at 105.990 kb on - strand, within GFF2057at 106.208 kb on + strand, within GFF2057at 106.208 kb on + strand, within GFF2057at 106.256 kb on + strand, within GFF2057at 106.418 kb on + strand, within GFF2057at 106.418 kb on + strand, within GFF2057at 106.418 kb on + strand, within GFF2057at 106.418 kb on + strand, within GFF2057at 106.418 kb on + strand, within GFF2057at 106.419 kb on - strand, within GFF2057at 106.419 kb on - strand, within GFF2057at 106.419 kb on - strand, within GFF2057at 106.419 kb on - strand, within GFF2057at 106.419 kb on - strand, within GFF2057at 106.419 kb on - strand, within GFF2057at 106.437 kb on - strand, within GFF2057at 106.437 kb on - strand, within GFF2057at 106.568 kb on + strandat 106.569 kb on - strandat 106.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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103,891 + GFF2054 0.81 -0.0
103,891 + GFF2054 0.81 -0.3
103,891 + GFF2054 0.81 -0.4
103,891 + GFF2054 0.81 +1.2
103,891 + GFF2054 0.81 +1.9
103,891 + GFF2054 0.81 +0.4
103,891 + GFF2054 0.81 +0.0
103,891 + GFF2054 0.81 -0.7
103,891 + GFF2054 0.81 -0.0
103,891 + GFF2054 0.81 -0.5
103,891 + GFF2054 0.81 -0.6
103,891 + GFF2054 0.81 -0.3
103,891 + GFF2054 0.81 -0.9
103,891 + GFF2054 0.81 -0.3
103,891 + GFF2054 0.81 -0.6
103,891 + GFF2054 0.81 -0.8
103,891 + GFF2054 0.81 +0.7
103,891 + GFF2054 0.81 +0.5
103,891 + GFF2054 0.81 -0.9
103,891 + GFF2054 0.81 +4.6
103,891 + GFF2054 0.81 +0.1
103,891 + GFF2054 0.81 -0.7
103,891 + GFF2054 0.81 -1.1
103,891 + GFF2054 0.81 -1.0
103,892 - GFF2054 0.81 -0.4
103,892 - GFF2054 0.81 -1.1
103,892 - GFF2054 0.81 -0.6
103,892 - GFF2054 0.81 +1.1
103,892 - GFF2054 0.81 +0.2
103,892 - GFF2054 0.81 -0.6
103,892 - GFF2054 0.81 +0.3
103,892 - GFF2054 0.81 -0.6
103,892 - GFF2054 0.81 -0.3
103,892 - GFF2054 0.81 -0.5
103,892 - GFF2054 0.81 +0.6
103,892 - GFF2054 0.81 +0.7
103,892 - GFF2054 0.81 +0.3
103,892 - GFF2054 0.81 -0.2
103,892 - GFF2054 0.81 -0.8
103,892 - GFF2054 0.81 -0.4
103,892 - GFF2054 0.81 -0.5
103,892 - GFF2054 0.81 +0.4
103,892 - GFF2054 0.81 +0.1
103,892 - GFF2054 0.81 +0.4
103,892 - GFF2054 0.81 -0.2
103,892 - GFF2054 0.81 -0.5
103,892 - GFF2054 0.81 +0.6
103,892 - GFF2054 0.81 -0.2
103,892 - GFF2054 0.81 +0.1
103,892 - GFF2054 0.81 -0.2
103,892 - GFF2054 0.81 -0.9
103,892 - GFF2054 0.81 +1.1
103,892 - GFF2054 0.81 -0.7
103,892 - GFF2054 0.81 -0.3
103,892 - GFF2054 0.81 -2.4
103,915 + GFF2054 0.84 +0.3
103,915 + GFF2054 0.84 +0.1
103,915 + GFF2054 0.84 -1.2
103,916 - GFF2054 0.84 -1.1
103,916 - GFF2054 0.84 -1.2
103,916 - GFF2054 0.84 +0.6
103,916 - GFF2054 0.84 -0.8
104,038 + +1.4
104,038 + -0.1
104,038 + -0.4
104,039 - -0.2
104,039 - -0.2
104,135 + GFF2055 0.10 -0.4
104,135 + GFF2055 0.10 +1.1
104,135 + GFF2055 0.10 +0.5
104,135 + GFF2055 0.10 -0.0
104,135 + GFF2055 0.10 -1.0
104,135 + GFF2055 0.10 -0.2
104,135 + GFF2055 0.10 +0.1
104,135 + GFF2055 0.10 -0.2
104,135 + GFF2055 0.10 -0.6
104,135 + GFF2055 0.10 -0.3
104,135 + GFF2055 0.10 -0.2
104,135 + GFF2055 0.10 -0.4
104,135 + GFF2055 0.10 -0.2
104,136 - GFF2055 0.10 +0.5
104,136 - GFF2055 0.10 -0.5
104,136 - GFF2055 0.10 +0.2
104,136 - GFF2055 0.10 -0.2
104,136 - GFF2055 0.10 -0.8
104,136 - GFF2055 0.10 -0.9
104,168 + GFF2055 0.14 -0.0
104,168 + GFF2055 0.14 -0.4
104,168 + GFF2055 0.14 +0.3
104,168 + GFF2055 0.14 -0.5
104,169 - GFF2055 0.14 +0.3
104,169 - GFF2055 0.14 -0.2
104,169 - GFF2055 0.14 +0.7
104,169 - GFF2055 0.14 -0.3
104,169 - GFF2055 0.14 +0.5
104,385 - GFF2055 0.40 +1.5
104,549 + GFF2055 0.60 -0.5
104,550 - GFF2055 0.60 -0.6
104,550 - GFF2055 0.60 -0.5
104,550 - GFF2055 0.60 +0.9
104,570 + GFF2055 0.63 -1.2
104,570 + GFF2055 0.63 -1.0
104,570 + GFF2055 0.63 +2.1
104,570 + GFF2055 0.63 -1.0
104,570 + GFF2055 0.63 +0.7
104,571 - GFF2055 0.63 +1.4
104,571 - GFF2055 0.63 -0.6
104,571 - GFF2055 0.63 +0.5
104,571 - GFF2055 0.63 -0.3
104,571 - GFF2055 0.63 +1.1
104,571 - GFF2055 0.63 -0.1
104,571 - GFF2055 0.63 -0.3
104,822 + -0.3
104,822 + -0.1
104,823 - -0.5
104,823 - -0.3
104,823 - -0.3
104,823 - -0.1
104,823 - +0.6
104,823 - +0.3
104,823 - -0.1
104,823 - -0.0
105,080 - GFF2056 0.29 +1.1
105,178 + GFF2056 0.43 +0.1
105,179 - GFF2056 0.43 -0.0
105,179 - GFF2056 0.43 -0.8
105,341 - GFF2056 0.66 +2.1
105,341 - GFF2056 0.66 +1.1
105,580 + +0.6
105,580 + -0.3
105,580 + -0.6
105,580 + -0.5
105,581 - -1.5
105,581 - +1.1
105,581 - -1.1
105,710 + GFF2057 0.10 +0.9
105,710 + GFF2057 0.10 +0.8
105,710 + GFF2057 0.10 -0.2
105,711 - GFF2057 0.10 -0.1
105,711 - GFF2057 0.10 +0.9
105,914 + GFF2057 0.31 -0.6
105,914 + GFF2057 0.31 -0.2
105,914 + GFF2057 0.31 -0.2
105,914 + GFF2057 0.31 +0.1
105,914 + GFF2057 0.31 +0.8
105,915 - GFF2057 0.31 +0.1
105,915 - GFF2057 0.31 -0.4
105,915 - GFF2057 0.31 +1.5
105,915 - GFF2057 0.31 +0.0
105,915 - GFF2057 0.31 -0.6
105,915 - GFF2057 0.31 -0.2
105,915 - GFF2057 0.31 -0.6
105,971 + GFF2057 0.37 -0.2
105,972 - GFF2057 0.37 -0.7
105,989 + GFF2057 0.39 -0.1
105,989 + GFF2057 0.39 +0.2
105,989 + GFF2057 0.39 -0.7
105,989 + GFF2057 0.39 +1.1
105,990 - GFF2057 0.39 -0.1
105,990 - GFF2057 0.39 +0.3
105,990 - GFF2057 0.39 -1.2
105,990 - GFF2057 0.39 +0.0
105,990 - GFF2057 0.39 -0.5
106,208 + GFF2057 0.62 -0.4
106,208 + GFF2057 0.62 -0.6
106,256 + GFF2057 0.67 -0.0
106,418 + GFF2057 0.83 +0.7
106,418 + GFF2057 0.83 -0.1
106,418 + GFF2057 0.83 -0.3
106,418 + GFF2057 0.83 -0.6
106,418 + GFF2057 0.83 +0.2
106,419 - GFF2057 0.83 +0.4
106,419 - GFF2057 0.83 +0.5
106,419 - GFF2057 0.83 +1.1
106,419 - GFF2057 0.83 -0.3
106,419 - GFF2057 0.83 -0.3
106,419 - GFF2057 0.83 -1.2
106,437 - GFF2057 0.85 -0.9
106,437 - GFF2057 0.85 +0.3
106,568 + -1.1
106,569 - -0.1
106,569 - -1.6

Or see this region's nucleotide sequence