Strain Fitness in Variovorax sp. SCN45 around GFF2051

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2049 and GFF2050 are separated by 26 nucleotidesGFF2050 and GFF2051 are separated by 156 nucleotidesGFF2051 and GFF2052 are separated by 142 nucleotides GFF2049 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 96,983 to 97,903 GFF2049 GFF2050 - hypothetical protein, at 97,930 to 98,430 GFF2050 GFF2051 - FIG00463476: hypothetical protein, at 98,587 to 99,234 GFF2051 GFF2052 - hypothetical protein, at 99,377 to 101,494 GFF2052 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1 2at 97.605 kb on + strand, within GFF2049at 97.606 kb on - strand, within GFF2049at 97.606 kb on - strand, within GFF2049at 97.606 kb on - strand, within GFF2049at 97.606 kb on - strand, within GFF2049at 97.931 kb on + strandat 97.931 kb on + strandat 97.931 kb on + strandat 97.931 kb on + strandat 97.931 kb on + strandat 97.931 kb on + strandat 97.932 kb on - strandat 98.207 kb on + strand, within GFF2050at 98.207 kb on + strand, within GFF2050at 98.208 kb on - strand, within GFF2050at 98.505 kb on + strandat 98.506 kb on - strandat 98.578 kb on - strandat 98.578 kb on - strandat 98.588 kb on + strandat 98.588 kb on + strandat 98.588 kb on + strandat 98.588 kb on + strandat 98.588 kb on + strandat 98.588 kb on + strandat 98.588 kb on + strandat 98.588 kb on + strandat 98.589 kb on - strandat 98.589 kb on - strandat 98.589 kb on - strandat 98.589 kb on - strandat 98.589 kb on - strandat 98.589 kb on - strandat 98.589 kb on - strandat 98.589 kb on - strandat 98.768 kb on + strand, within GFF2051at 98.768 kb on + strand, within GFF2051at 98.768 kb on + strand, within GFF2051at 98.768 kb on + strand, within GFF2051at 98.768 kb on + strand, within GFF2051at 98.768 kb on + strand, within GFF2051at 98.769 kb on - strand, within GFF2051at 98.769 kb on - strand, within GFF2051at 98.769 kb on - strand, within GFF2051at 98.769 kb on - strand, within GFF2051at 98.769 kb on - strand, within GFF2051at 98.769 kb on - strand, within GFF2051at 98.769 kb on - strand, within GFF2051at 98.956 kb on - strand, within GFF2051at 99.008 kb on + strand, within GFF2051at 99.008 kb on + strand, within GFF2051at 99.008 kb on + strand, within GFF2051at 99.009 kb on - strand, within GFF2051at 99.009 kb on - strand, within GFF2051at 99.009 kb on - strand, within GFF2051at 99.269 kb on + strandat 99.269 kb on + strandat 99.269 kb on + strandat 99.269 kb on + strandat 99.269 kb on + strandat 99.269 kb on + strandat 99.269 kb on + strandat 99.269 kb on + strandat 99.269 kb on + strandat 99.269 kb on + strandat 99.270 kb on - strandat 99.270 kb on - strandat 99.270 kb on - strandat 99.270 kb on - strandat 99.270 kb on - strandat 99.304 kb on + strandat 99.304 kb on + strandat 99.305 kb on - strandat 99.588 kb on + strandat 99.588 kb on + strandat 99.588 kb on + strandat 99.589 kb on - strand, within GFF2052at 99.589 kb on - strand, within GFF2052at 99.589 kb on - strand, within GFF2052at 99.589 kb on - strand, within GFF2052at 99.589 kb on - strand, within GFF2052at 99.735 kb on + strand, within GFF2052at 99.735 kb on + strand, within GFF2052at 99.735 kb on + strand, within GFF2052at 99.735 kb on + strand, within GFF2052at 99.735 kb on + strand, within GFF2052at 99.735 kb on + strand, within GFF2052at 99.736 kb on - strand, within GFF2052at 99.736 kb on - strand, within GFF2052at 99.736 kb on - strand, within GFF2052at 99.736 kb on - strand, within GFF2052at 99.736 kb on - strand, within GFF2052at 99.736 kb on - strand, within GFF2052at 99.843 kb on + strand, within GFF2052at 99.843 kb on + strand, within GFF2052at 99.843 kb on + strand, within GFF2052at 99.843 kb on + strand, within GFF2052at 99.843 kb on + strand, within GFF2052at 99.843 kb on + strand, within GFF2052at 99.843 kb on + strand, within GFF2052at 99.843 kb on + strand, within GFF2052at 99.843 kb on + strand, within GFF2052at 99.844 kb on - strand, within GFF2052at 99.844 kb on - strand, within GFF2052at 99.844 kb on - strand, within GFF2052at 99.882 kb on + strand, within GFF2052at 99.883 kb on - strand, within GFF2052at 99.883 kb on - strand, within GFF2052at 99.883 kb on - strand, within GFF2052at 99.883 kb on - strand, within GFF2052at 99.906 kb on + strand, within GFF2052at 99.906 kb on + strand, within GFF2052at 99.906 kb on + strand, within GFF2052at 99.906 kb on + strand, within GFF2052at 99.906 kb on + strand, within GFF2052at 99.906 kb on + strand, within GFF2052at 99.906 kb on + strand, within GFF2052at 99.907 kb on - strand, within GFF2052at 99.907 kb on - strand, within GFF2052at 99.907 kb on - strand, within GFF2052at 99.907 kb on - strand, within GFF2052at 99.907 kb on - strand, within GFF2052at 99.907 kb on - strand, within GFF2052at 99.993 kb on + strand, within GFF2052at 99.993 kb on + strand, within GFF2052at 99.993 kb on + strand, within GFF2052at 99.994 kb on - strand, within GFF2052at 99.994 kb on - strand, within GFF2052at 99.994 kb on - strand, within GFF2052at 100.059 kb on + strand, within GFF2052at 100.059 kb on + strand, within GFF2052at 100.059 kb on + strand, within GFF2052at 100.060 kb on - strand, within GFF2052at 100.060 kb on - strand, within GFF2052at 100.060 kb on - strand, within GFF2052at 100.060 kb on - strand, within GFF2052

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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97,605 + GFF2049 0.68 -1.5
97,606 - GFF2049 0.68 -0.5
97,606 - GFF2049 0.68 -0.9
97,606 - GFF2049 0.68 -1.5
97,606 - GFF2049 0.68 -0.4
97,931 + +0.7
97,931 + +0.5
97,931 + +0.1
97,931 + +0.5
97,931 + +0.5
97,931 + -0.8
97,932 - +0.7
98,207 + GFF2050 0.55 -1.4
98,207 + GFF2050 0.55 +0.3
98,208 - GFF2050 0.55 -0.2
98,505 + -0.4
98,506 - -1.1
98,578 - -1.2
98,578 - +0.5
98,588 + +0.1
98,588 + -0.7
98,588 + -1.2
98,588 + -0.0
98,588 + +0.8
98,588 + -0.3
98,588 + -0.5
98,588 + -1.7
98,589 - -0.7
98,589 - -1.0
98,589 - -0.7
98,589 - -0.5
98,589 - +0.7
98,589 - +0.3
98,589 - +0.0
98,589 - -1.6
98,768 + GFF2051 0.28 -0.6
98,768 + GFF2051 0.28 -0.7
98,768 + GFF2051 0.28 -0.5
98,768 + GFF2051 0.28 -0.4
98,768 + GFF2051 0.28 -0.2
98,768 + GFF2051 0.28 -0.3
98,769 - GFF2051 0.28 -0.8
98,769 - GFF2051 0.28 -0.5
98,769 - GFF2051 0.28 -0.6
98,769 - GFF2051 0.28 +0.5
98,769 - GFF2051 0.28 -0.1
98,769 - GFF2051 0.28 -0.2
98,769 - GFF2051 0.28 -0.7
98,956 - GFF2051 0.57 -0.9
99,008 + GFF2051 0.65 -0.1
99,008 + GFF2051 0.65 -2.2
99,008 + GFF2051 0.65 -0.9
99,009 - GFF2051 0.65 +0.1
99,009 - GFF2051 0.65 +0.4
99,009 - GFF2051 0.65 -0.0
99,269 + -0.1
99,269 + +0.0
99,269 + -0.4
99,269 + -1.1
99,269 + -0.2
99,269 + +0.1
99,269 + -0.2
99,269 + -0.0
99,269 + -0.3
99,269 + -0.4
99,270 - -1.7
99,270 - -0.9
99,270 - -0.4
99,270 - -0.5
99,270 - +0.2
99,304 + -0.5
99,304 + +0.6
99,305 - +1.4
99,588 + -0.4
99,588 + -0.5
99,588 + -0.3
99,589 - GFF2052 0.10 +1.1
99,589 - GFF2052 0.10 -0.0
99,589 - GFF2052 0.10 -1.1
99,589 - GFF2052 0.10 +0.6
99,589 - GFF2052 0.10 -1.2
99,735 + GFF2052 0.17 +0.0
99,735 + GFF2052 0.17 +0.0
99,735 + GFF2052 0.17 -0.7
99,735 + GFF2052 0.17 +0.4
99,735 + GFF2052 0.17 -0.3
99,735 + GFF2052 0.17 -0.5
99,736 - GFF2052 0.17 -0.6
99,736 - GFF2052 0.17 -0.6
99,736 - GFF2052 0.17 +0.7
99,736 - GFF2052 0.17 +0.3
99,736 - GFF2052 0.17 -1.0
99,736 - GFF2052 0.17 +0.5
99,843 + GFF2052 0.22 +1.1
99,843 + GFF2052 0.22 -0.1
99,843 + GFF2052 0.22 -0.3
99,843 + GFF2052 0.22 +0.0
99,843 + GFF2052 0.22 +0.1
99,843 + GFF2052 0.22 +0.1
99,843 + GFF2052 0.22 +0.3
99,843 + GFF2052 0.22 +0.1
99,843 + GFF2052 0.22 -0.2
99,844 - GFF2052 0.22 +0.9
99,844 - GFF2052 0.22 -0.3
99,844 - GFF2052 0.22 +2.5
99,882 + GFF2052 0.24 -0.6
99,883 - GFF2052 0.24 -0.5
99,883 - GFF2052 0.24 -0.5
99,883 - GFF2052 0.24 -0.3
99,883 - GFF2052 0.24 -1.1
99,906 + GFF2052 0.25 -0.1
99,906 + GFF2052 0.25 +0.4
99,906 + GFF2052 0.25 -0.2
99,906 + GFF2052 0.25 -0.3
99,906 + GFF2052 0.25 -0.9
99,906 + GFF2052 0.25 -1.1
99,906 + GFF2052 0.25 -0.7
99,907 - GFF2052 0.25 -0.2
99,907 - GFF2052 0.25 -0.5
99,907 - GFF2052 0.25 +0.6
99,907 - GFF2052 0.25 +0.2
99,907 - GFF2052 0.25 -0.1
99,907 - GFF2052 0.25 -0.1
99,993 + GFF2052 0.29 -0.5
99,993 + GFF2052 0.29 +0.4
99,993 + GFF2052 0.29 -0.3
99,994 - GFF2052 0.29 -0.6
99,994 - GFF2052 0.29 -0.7
99,994 - GFF2052 0.29 -1.5
100,059 + GFF2052 0.32 -0.4
100,059 + GFF2052 0.32 -0.2
100,059 + GFF2052 0.32 +1.1
100,060 - GFF2052 0.32 -0.9
100,060 - GFF2052 0.32 -0.4
100,060 - GFF2052 0.32 +0.8
100,060 - GFF2052 0.32 -1.0

Or see this region's nucleotide sequence