Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1922 and GFF1923 are separated by 83 nucleotides GFF1923 and GFF1924 are separated by 31 nucleotides
GFF1922 - Acyl-CoA dehydrogenase, at 602,060 to 603,304
GFF1922
GFF1923 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 603,388 to 604,416
GFF1923
GFF1924 - Aliphatic sulfonate monooxygenase family, FMNH2- or F420-dependent, at 604,448 to 605,569
GFF1924
Position (kb) 603
604
605 Strain fitness (log2 ratio) -2
-1
0
1
2 at 602.478 kb on + strand, within GFF1922 at 602.478 kb on + strand, within GFF1922 at 602.788 kb on - strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 603.091 kb on - strand, within GFF1922 at 603.358 kb on - strand at 603.549 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.608 kb on - strand, within GFF1923 at 603.841 kb on + strand, within GFF1923 at 603.842 kb on - strand, within GFF1923 at 603.842 kb on - strand, within GFF1923 at 603.865 kb on + strand, within GFF1923 at 603.866 kb on - strand, within GFF1923 at 603.868 kb on + strand, within GFF1923 at 603.868 kb on + strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.988 kb on + strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.995 kb on - strand, within GFF1923 at 604.078 kb on + strand, within GFF1923 at 604.078 kb on + strand, within GFF1923 at 604.079 kb on - strand, within GFF1923 at 604.079 kb on - strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.187 kb on - strand, within GFF1923 at 604.187 kb on - strand, within GFF1923 at 604.554 kb on - strand at 604.781 kb on + strand, within GFF1924 at 604.782 kb on - strand, within GFF1924 at 604.782 kb on - strand, within GFF1924 at 604.847 kb on + strand, within GFF1924 at 604.865 kb on + strand, within GFF1924 at 604.866 kb on - strand, within GFF1924 at 604.866 kb on - strand, within GFF1924 at 604.887 kb on + strand, within GFF1924 at 604.887 kb on + strand, within GFF1924 at 605.000 kb on + strand, within GFF1924 at 605.000 kb on + strand, within GFF1924 at 605.001 kb on - strand, within GFF1924 at 605.045 kb on + strand, within GFF1924 at 605.046 kb on - strand, within GFF1924 at 605.046 kb on - strand, within GFF1924 at 605.252 kb on + strand, within GFF1924
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 602,478 + GFF1922 0.34 -1.1 602,478 + GFF1922 0.34 -1.0 602,788 - GFF1922 0.58 -0.2 602,994 + GFF1922 0.75 -0.2 602,994 + GFF1922 0.75 +0.0 602,994 + GFF1922 0.75 -2.5 602,995 - GFF1922 0.75 -0.4 602,995 - GFF1922 0.75 +1.1 602,995 - GFF1922 0.75 -0.1 602,995 - GFF1922 0.75 +0.1 603,091 - GFF1922 0.83 +1.9 603,358 - +0.3 603,549 + GFF1923 0.16 -1.2 603,553 + GFF1923 0.16 -0.9 603,553 + GFF1923 0.16 -0.7 603,553 + GFF1923 0.16 -0.5 603,553 + GFF1923 0.16 -0.3 603,553 + GFF1923 0.16 +1.2 603,553 + GFF1923 0.16 -0.3 603,554 - GFF1923 0.16 +0.2 603,554 - GFF1923 0.16 +0.9 603,554 - GFF1923 0.16 -0.9 603,554 - GFF1923 0.16 +0.0 603,554 - GFF1923 0.16 -0.4 603,608 - GFF1923 0.21 -0.0 603,841 + GFF1923 0.44 -0.7 603,842 - GFF1923 0.44 +0.1 603,842 - GFF1923 0.44 +0.8 603,865 + GFF1923 0.46 +0.6 603,866 - GFF1923 0.46 +2.5 603,868 + GFF1923 0.47 -0.1 603,868 + GFF1923 0.47 -0.4 603,869 - GFF1923 0.47 -0.3 603,869 - GFF1923 0.47 +0.1 603,869 - GFF1923 0.47 -0.1 603,988 + GFF1923 0.58 +0.3 603,989 - GFF1923 0.58 +0.3 603,989 - GFF1923 0.58 +0.3 603,989 - GFF1923 0.58 -1.2 603,989 - GFF1923 0.58 +1.1 603,989 - GFF1923 0.58 +0.0 603,995 - GFF1923 0.59 +1.0 604,078 + GFF1923 0.67 +0.9 604,078 + GFF1923 0.67 +0.7 604,079 - GFF1923 0.67 -2.5 604,079 - GFF1923 0.67 -1.0 604,186 + GFF1923 0.78 +0.9 604,186 + GFF1923 0.78 -0.2 604,186 + GFF1923 0.78 +0.1 604,186 + GFF1923 0.78 -0.3 604,186 + GFF1923 0.78 -0.3 604,186 + GFF1923 0.78 +0.0 604,187 - GFF1923 0.78 -0.1 604,187 - GFF1923 0.78 -0.7 604,554 - +0.3 604,781 + GFF1924 0.30 -0.7 604,782 - GFF1924 0.30 +0.6 604,782 - GFF1924 0.30 -1.6 604,847 + GFF1924 0.36 +0.2 604,865 + GFF1924 0.37 +0.1 604,866 - GFF1924 0.37 -0.3 604,866 - GFF1924 0.37 +1.3 604,887 + GFF1924 0.39 -0.6 604,887 + GFF1924 0.39 -0.6 605,000 + GFF1924 0.49 +0.5 605,000 + GFF1924 0.49 +1.6 605,001 - GFF1924 0.49 +0.1 605,045 + GFF1924 0.53 -0.1 605,046 - GFF1924 0.53 +1.3 605,046 - GFF1924 0.53 -0.4 605,252 + GFF1924 0.72 -0.7
Or see this region's nucleotide sequence