Strain Fitness in Variovorax sp. SCN45 around GFF1916

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1914 and GFF1915 are separated by 86 nucleotidesGFF1915 and GFF1916 are separated by 111 nucleotidesGFF1916 and GFF1917 are separated by 131 nucleotides GFF1914 - Guanine deaminase (EC 3.5.4.3), at 593,867 to 595,153 GFF1914 GFF1915 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 595,240 to 595,806 GFF1915 GFF1916 - YpfJ protein, zinc metalloprotease superfamily, at 595,918 to 596,805 GFF1916 GFF1917 - ATP-dependent RNA helicase Bcep18194_A5658, at 596,937 to 598,406 GFF1917 Position (kb) 595 596 597Strain fitness (log2 ratio) -2 -1 0 1 2at 595.151 kb on + strandat 595.151 kb on + strandat 595.151 kb on + strandat 595.151 kb on + strandat 595.152 kb on - strandat 595.239 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.863 kb on - strandat 595.863 kb on - strandat 596.064 kb on + strand, within GFF1916at 596.065 kb on - strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.329 kb on + strand, within GFF1916at 596.329 kb on + strand, within GFF1916at 596.329 kb on + strand, within GFF1916at 596.330 kb on - strand, within GFF1916at 596.330 kb on - strand, within GFF1916at 596.330 kb on - strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.354 kb on - strand, within GFF1916at 596.354 kb on - strand, within GFF1916at 596.354 kb on - strand, within GFF1916at 596.354 kb on - strand, within GFF1916at 596.372 kb on - strand, within GFF1916at 596.372 kb on - strand, within GFF1916at 596.422 kb on + strand, within GFF1916at 596.422 kb on + strand, within GFF1916at 596.422 kb on + strand, within GFF1916at 596.423 kb on - strand, within GFF1916at 596.423 kb on - strand, within GFF1916at 596.423 kb on - strand, within GFF1916at 596.423 kb on - strand, within GFF1916at 596.753 kb on - strandat 596.848 kb on + strandat 596.849 kb on - strandat 596.860 kb on - strandat 596.959 kb on + strandat 596.959 kb on + strandat 596.959 kb on + strandat 596.960 kb on - strandat 597.003 kb on + strandat 597.004 kb on - strandat 597.240 kb on + strand, within GFF1917at 597.240 kb on + strand, within GFF1917at 597.241 kb on - strand, within GFF1917at 597.241 kb on - strand, within GFF1917at 597.241 kb on - strand, within GFF1917at 597.249 kb on + strand, within GFF1917at 597.249 kb on + strand, within GFF1917at 597.249 kb on + strand, within GFF1917at 597.250 kb on - strand, within GFF1917at 597.250 kb on - strand, within GFF1917at 597.250 kb on - strand, within GFF1917at 597.250 kb on - strand, within GFF1917at 597.402 kb on + strand, within GFF1917at 597.402 kb on + strand, within GFF1917at 597.402 kb on + strand, within GFF1917at 597.402 kb on + strand, within GFF1917at 597.403 kb on - strand, within GFF1917at 597.403 kb on - strand, within GFF1917at 597.474 kb on + strand, within GFF1917at 597.475 kb on - strand, within GFF1917at 597.549 kb on + strand, within GFF1917at 597.549 kb on + strand, within GFF1917at 597.550 kb on - strand, within GFF1917at 597.550 kb on - strand, within GFF1917

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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595,151 + -0.3
595,151 + -0.3
595,151 + -0.9
595,151 + +0.2
595,152 - +0.7
595,239 + -0.8
595,862 + -0.1
595,862 + +0.7
595,862 + +0.1
595,862 + -2.0
595,862 + -0.5
595,862 + +0.2
595,862 + +0.4
595,862 + -0.9
595,862 + -0.9
595,862 + +2.2
595,862 + -0.2
595,862 + -0.3
595,862 + -0.6
595,862 + -0.0
595,863 - -0.6
595,863 - -0.0
596,064 + GFF1916 0.16 -0.3
596,065 - GFF1916 0.17 +0.0
596,248 + GFF1916 0.37 -0.1
596,248 + GFF1916 0.37 +0.9
596,248 + GFF1916 0.37 -0.6
596,248 + GFF1916 0.37 +1.6
596,248 + GFF1916 0.37 -0.1
596,248 + GFF1916 0.37 +0.7
596,248 + GFF1916 0.37 -0.7
596,248 + GFF1916 0.37 +0.3
596,248 + GFF1916 0.37 -0.9
596,248 + GFF1916 0.37 -0.1
596,248 + GFF1916 0.37 -0.1
596,248 + GFF1916 0.37 -1.8
596,248 + GFF1916 0.37 -0.1
596,248 + GFF1916 0.37 +0.4
596,249 - GFF1916 0.37 -0.3
596,249 - GFF1916 0.37 -1.0
596,249 - GFF1916 0.37 -1.0
596,249 - GFF1916 0.37 -0.2
596,249 - GFF1916 0.37 -1.5
596,249 - GFF1916 0.37 -1.0
596,249 - GFF1916 0.37 +0.9
596,249 - GFF1916 0.37 -1.6
596,249 - GFF1916 0.37 +0.7
596,249 - GFF1916 0.37 -0.1
596,249 - GFF1916 0.37 +0.4
596,249 - GFF1916 0.37 -0.1
596,329 + GFF1916 0.46 -1.5
596,329 + GFF1916 0.46 +0.2
596,329 + GFF1916 0.46 +1.0
596,330 - GFF1916 0.46 -0.2
596,330 - GFF1916 0.46 +0.4
596,330 - GFF1916 0.46 -0.1
596,353 + GFF1916 0.49 -0.7
596,353 + GFF1916 0.49 +0.4
596,353 + GFF1916 0.49 +1.4
596,353 + GFF1916 0.49 +0.3
596,353 + GFF1916 0.49 +0.3
596,353 + GFF1916 0.49 +0.6
596,353 + GFF1916 0.49 -0.1
596,354 - GFF1916 0.49 +0.3
596,354 - GFF1916 0.49 +0.4
596,354 - GFF1916 0.49 -0.3
596,354 - GFF1916 0.49 +1.1
596,372 - GFF1916 0.51 -0.5
596,372 - GFF1916 0.51 -1.2
596,422 + GFF1916 0.57 -1.3
596,422 + GFF1916 0.57 -0.6
596,422 + GFF1916 0.57 +0.9
596,423 - GFF1916 0.57 +0.4
596,423 - GFF1916 0.57 -0.3
596,423 - GFF1916 0.57 -0.3
596,423 - GFF1916 0.57 +0.0
596,753 - +0.1
596,848 + +0.2
596,849 - +0.0
596,860 - +0.1
596,959 + +1.9
596,959 + -0.5
596,959 + +0.1
596,960 - +0.6
597,003 + +0.8
597,004 - -0.9
597,240 + GFF1917 0.21 -0.5
597,240 + GFF1917 0.21 +1.9
597,241 - GFF1917 0.21 +0.6
597,241 - GFF1917 0.21 +0.1
597,241 - GFF1917 0.21 -0.1
597,249 + GFF1917 0.21 +1.0
597,249 + GFF1917 0.21 +0.8
597,249 + GFF1917 0.21 +0.1
597,250 - GFF1917 0.21 +0.6
597,250 - GFF1917 0.21 -0.2
597,250 - GFF1917 0.21 +1.1
597,250 - GFF1917 0.21 -0.7
597,402 + GFF1917 0.32 +0.5
597,402 + GFF1917 0.32 +0.1
597,402 + GFF1917 0.32 +0.1
597,402 + GFF1917 0.32 -1.3
597,403 - GFF1917 0.32 +0.3
597,403 - GFF1917 0.32 -0.6
597,474 + GFF1917 0.37 -0.3
597,475 - GFF1917 0.37 +0.9
597,549 + GFF1917 0.42 -0.8
597,549 + GFF1917 0.42 +2.3
597,550 - GFF1917 0.42 +1.4
597,550 - GFF1917 0.42 -0.8

Or see this region's nucleotide sequence