Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1881 and GFF1882 overlap by 4 nucleotides GFF1882 and GFF1883 are separated by 45 nucleotides GFF1883 and GFF1884 are separated by 11 nucleotides
GFF1881 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-) / 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-), at 555,177 to 557,003
GFF1881
GFF1882 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-), at 557,000 to 558,055
GFF1882
GFF1883 - putative signal-transduction protein with CBS domains, at 558,101 to 558,538
GFF1883
GFF1884 - Gluconokinase (EC 2.7.1.12), at 558,550 to 559,071
GFF1884
Position (kb) 556
557
558
559 Strain fitness (log2 ratio) -1
0
1
2 at 556.101 kb on + strand, within GFF1881 at 556.101 kb on + strand, within GFF1881 at 556.102 kb on - strand, within GFF1881 at 556.203 kb on + strand, within GFF1881 at 556.204 kb on - strand, within GFF1881 at 556.392 kb on + strand, within GFF1881 at 556.393 kb on - strand, within GFF1881 at 556.393 kb on - strand, within GFF1881 at 556.453 kb on - strand, within GFF1881 at 556.453 kb on - strand, within GFF1881 at 556.521 kb on + strand, within GFF1881 at 556.521 kb on + strand, within GFF1881 at 556.521 kb on + strand, within GFF1881 at 556.522 kb on - strand, within GFF1881 at 556.522 kb on - strand, within GFF1881 at 556.551 kb on + strand, within GFF1881 at 556.552 kb on - strand, within GFF1881 at 556.561 kb on - strand, within GFF1881 at 556.581 kb on + strand, within GFF1881 at 556.582 kb on - strand, within GFF1881 at 556.582 kb on - strand, within GFF1881 at 556.582 kb on - strand, within GFF1881 at 556.582 kb on - strand, within GFF1881 at 556.587 kb on + strand, within GFF1881 at 556.587 kb on + strand, within GFF1881 at 556.587 kb on + strand, within GFF1881 at 556.588 kb on - strand, within GFF1881 at 556.588 kb on - strand, within GFF1881 at 556.588 kb on - strand, within GFF1881 at 556.689 kb on + strand, within GFF1881 at 556.690 kb on - strand, within GFF1881 at 557.006 kb on + strand at 557.006 kb on + strand at 557.006 kb on + strand at 557.006 kb on + strand at 557.007 kb on - strand at 557.007 kb on - strand at 557.007 kb on - strand at 557.075 kb on + strand at 557.075 kb on + strand at 557.076 kb on - strand at 557.222 kb on + strand, within GFF1882 at 557.223 kb on - strand, within GFF1882 at 557.223 kb on - strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.316 kb on - strand, within GFF1882 at 557.316 kb on - strand, within GFF1882 at 557.316 kb on - strand, within GFF1882 at 557.402 kb on + strand, within GFF1882 at 557.403 kb on - strand, within GFF1882 at 557.403 kb on - strand, within GFF1882 at 557.403 kb on - strand, within GFF1882 at 557.403 kb on - strand, within GFF1882 at 557.426 kb on + strand, within GFF1882 at 557.549 kb on + strand, within GFF1882 at 557.549 kb on + strand, within GFF1882 at 557.549 kb on + strand, within GFF1882 at 557.549 kb on + strand, within GFF1882 at 557.550 kb on - strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.925 kb on - strand, within GFF1882 at 558.874 kb on + strand, within GFF1884 at 558.875 kb on - strand, within GFF1884 at 558.875 kb on - strand, within GFF1884
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 556,101 + GFF1881 0.51 -0.0 556,101 + GFF1881 0.51 +0.2 556,102 - GFF1881 0.51 -0.1 556,203 + GFF1881 0.56 -0.3 556,204 - GFF1881 0.56 -0.1 556,392 + GFF1881 0.67 -0.3 556,393 - GFF1881 0.67 -0.0 556,393 - GFF1881 0.67 -0.8 556,453 - GFF1881 0.70 +0.9 556,453 - GFF1881 0.70 -1.0 556,521 + GFF1881 0.74 -0.2 556,521 + GFF1881 0.74 -0.3 556,521 + GFF1881 0.74 -1.4 556,522 - GFF1881 0.74 +0.3 556,522 - GFF1881 0.74 +0.2 556,551 + GFF1881 0.75 -1.1 556,552 - GFF1881 0.75 -0.9 556,561 - GFF1881 0.76 +2.5 556,581 + GFF1881 0.77 -0.3 556,582 - GFF1881 0.77 -1.6 556,582 - GFF1881 0.77 -0.4 556,582 - GFF1881 0.77 -0.1 556,582 - GFF1881 0.77 -1.6 556,587 + GFF1881 0.77 -0.4 556,587 + GFF1881 0.77 -0.3 556,587 + GFF1881 0.77 -0.5 556,588 - GFF1881 0.77 -0.4 556,588 - GFF1881 0.77 -0.1 556,588 - GFF1881 0.77 -0.2 556,689 + GFF1881 0.83 -0.2 556,690 - GFF1881 0.83 -0.2 557,006 + +0.3 557,006 + -0.7 557,006 + +0.3 557,006 + +0.7 557,007 - -0.9 557,007 - +0.8 557,007 - -0.1 557,075 + -0.1 557,075 + +0.4 557,076 - +0.2 557,222 + GFF1882 0.21 +0.9 557,223 - GFF1882 0.21 -0.1 557,223 - GFF1882 0.21 -0.1 557,315 + GFF1882 0.30 -0.4 557,315 + GFF1882 0.30 -0.1 557,315 + GFF1882 0.30 -0.4 557,315 + GFF1882 0.30 -1.0 557,315 + GFF1882 0.30 +0.0 557,316 - GFF1882 0.30 +0.2 557,316 - GFF1882 0.30 -0.7 557,316 - GFF1882 0.30 -0.7 557,402 + GFF1882 0.38 -0.0 557,403 - GFF1882 0.38 -0.7 557,403 - GFF1882 0.38 -0.4 557,403 - GFF1882 0.38 +2.3 557,403 - GFF1882 0.38 -0.0 557,426 + GFF1882 0.40 -1.3 557,549 + GFF1882 0.52 -0.7 557,549 + GFF1882 0.52 -1.1 557,549 + GFF1882 0.52 -0.0 557,549 + GFF1882 0.52 -0.9 557,550 - GFF1882 0.52 +0.1 557,690 + GFF1882 0.65 +1.0 557,690 + GFF1882 0.65 -0.8 557,690 + GFF1882 0.65 +0.3 557,690 + GFF1882 0.65 -0.5 557,690 + GFF1882 0.65 -0.4 557,690 + GFF1882 0.65 -0.0 557,691 - GFF1882 0.65 -0.4 557,691 - GFF1882 0.65 -0.1 557,691 - GFF1882 0.65 +1.2 557,691 - GFF1882 0.65 +0.1 557,876 + GFF1882 0.83 -0.3 557,876 + GFF1882 0.83 -1.5 557,876 + GFF1882 0.83 -0.6 557,876 + GFF1882 0.83 -0.2 557,877 - GFF1882 0.83 -0.2 557,877 - GFF1882 0.83 -0.4 557,877 - GFF1882 0.83 -0.7 557,877 - GFF1882 0.83 +0.9 557,877 - GFF1882 0.83 -0.4 557,877 - GFF1882 0.83 +0.3 557,925 - GFF1882 0.88 -0.8 558,874 + GFF1884 0.62 -0.7 558,875 - GFF1884 0.62 +0.6 558,875 - GFF1884 0.62 -0.7
Or see this region's nucleotide sequence