Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1845 and GFF1846 are separated by 1 nucleotides GFF1846 and GFF1847 are separated by 50 nucleotides GFF1847 and GFF1848 are separated by 359 nucleotides
GFF1845 - Nucleoside ABC transporter, permease protein 1, at 516,192 to 517,343
GFF1845
GFF1846 - Nucleoside ABC transporter, permease protein 2, at 517,345 to 518,265
GFF1846
GFF1847 - Nucleoside ABC transporter, substrate-binding protein, at 518,316 to 519,491
GFF1847
GFF1848 - Proteins incorrectly called adenylate cyclase, at 519,851 to 523,891
GFF1848
Position (kb) 518
519
520 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 517.354 kb on + strand at 517.354 kb on + strand at 517.354 kb on + strand at 517.354 kb on + strand at 517.354 kb on + strand at 517.355 kb on - strand at 517.355 kb on - strand at 517.355 kb on - strand at 517.355 kb on - strand at 517.609 kb on + strand, within GFF1846 at 517.609 kb on + strand, within GFF1846 at 517.610 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.817 kb on - strand, within GFF1846 at 517.954 kb on + strand, within GFF1846 at 517.954 kb on + strand, within GFF1846 at 517.955 kb on - strand, within GFF1846 at 517.955 kb on - strand, within GFF1846 at 517.955 kb on - strand, within GFF1846 at 517.969 kb on + strand, within GFF1846 at 517.970 kb on - strand, within GFF1846 at 517.970 kb on - strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.075 kb on - strand, within GFF1846 at 518.075 kb on - strand, within GFF1846 at 518.075 kb on - strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.251 kb on + strand at 518.251 kb on + strand at 518.263 kb on + strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.694 kb on + strand, within GFF1847 at 518.694 kb on + strand, within GFF1847 at 518.695 kb on - strand, within GFF1847 at 518.695 kb on - strand, within GFF1847 at 518.695 kb on - strand, within GFF1847 at 518.761 kb on - strand, within GFF1847 at 518.787 kb on + strand, within GFF1847 at 518.787 kb on + strand, within GFF1847 at 518.788 kb on - strand, within GFF1847 at 518.802 kb on + strand, within GFF1847 at 518.802 kb on + strand, within GFF1847 at 518.802 kb on + strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.813 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 519.129 kb on + strand, within GFF1847 at 519.177 kb on + strand, within GFF1847 at 519.177 kb on + strand, within GFF1847 at 519.177 kb on + strand, within GFF1847 at 519.178 kb on - strand, within GFF1847 at 519.178 kb on - strand, within GFF1847 at 519.178 kb on - strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.444 kb on + strand at 519.444 kb on + strand at 519.444 kb on + strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.625 kb on + strand at 519.626 kb on - strand at 519.637 kb on + strand at 519.638 kb on - strand at 519.638 kb on - strand at 519.649 kb on + strand at 519.650 kb on - strand at 519.650 kb on - strand at 519.657 kb on - strand at 519.663 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.687 kb on - strand at 519.752 kb on + strand at 519.752 kb on + strand at 519.753 kb on - strand at 519.757 kb on + strand at 519.757 kb on + strand at 519.758 kb on - strand at 519.758 kb on - strand at 519.971 kb on + strand at 519.971 kb on + strand at 520.142 kb on + strand at 520.142 kb on + strand at 520.142 kb on + strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.429 kb on - strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 517,354 + +0.4 517,354 + +1.2 517,354 + -1.8 517,354 + +0.3 517,354 + +1.0 517,355 - +0.3 517,355 - -2.2 517,355 - +0.3 517,355 - -0.9 517,609 + GFF1846 0.29 -0.1 517,609 + GFF1846 0.29 -1.2 517,610 - GFF1846 0.29 -0.9 517,706 - GFF1846 0.39 -2.2 517,706 - GFF1846 0.39 +0.6 517,706 - GFF1846 0.39 +0.2 517,706 - GFF1846 0.39 +0.3 517,774 + GFF1846 0.47 -0.1 517,774 + GFF1846 0.47 +1.7 517,774 + GFF1846 0.47 +0.5 517,774 + GFF1846 0.47 -0.2 517,774 + GFF1846 0.47 +0.4 517,774 + GFF1846 0.47 -1.1 517,774 + GFF1846 0.47 -0.6 517,774 + GFF1846 0.47 -1.5 517,774 + GFF1846 0.47 -0.4 517,774 + GFF1846 0.47 +0.1 517,774 + GFF1846 0.47 +0.1 517,774 + GFF1846 0.47 -1.4 517,775 - GFF1846 0.47 -0.7 517,775 - GFF1846 0.47 +0.0 517,775 - GFF1846 0.47 -1.0 517,775 - GFF1846 0.47 +0.3 517,775 - GFF1846 0.47 +0.3 517,775 - GFF1846 0.47 -0.1 517,775 - GFF1846 0.47 -0.3 517,775 - GFF1846 0.47 +0.5 517,775 - GFF1846 0.47 +1.3 517,775 - GFF1846 0.47 +0.0 517,817 - GFF1846 0.51 -0.3 517,954 + GFF1846 0.66 +0.3 517,954 + GFF1846 0.66 +0.3 517,955 - GFF1846 0.66 -0.6 517,955 - GFF1846 0.66 +0.1 517,955 - GFF1846 0.66 +0.9 517,969 + GFF1846 0.68 -0.6 517,970 - GFF1846 0.68 -1.1 517,970 - GFF1846 0.68 -0.9 518,074 + GFF1846 0.79 +1.9 518,074 + GFF1846 0.79 -0.0 518,074 + GFF1846 0.79 -0.4 518,074 + GFF1846 0.79 -0.3 518,074 + GFF1846 0.79 +2.3 518,075 - GFF1846 0.79 -0.3 518,075 - GFF1846 0.79 +0.2 518,075 - GFF1846 0.79 -0.4 518,161 + GFF1846 0.89 +0.0 518,161 + GFF1846 0.89 +0.1 518,161 + GFF1846 0.89 -0.6 518,161 + GFF1846 0.89 +0.5 518,161 + GFF1846 0.89 -0.7 518,161 + GFF1846 0.89 -0.2 518,161 + GFF1846 0.89 -0.2 518,162 - GFF1846 0.89 +0.7 518,162 - GFF1846 0.89 -0.2 518,162 - GFF1846 0.89 -1.0 518,162 - GFF1846 0.89 -0.1 518,162 - GFF1846 0.89 +0.5 518,162 - GFF1846 0.89 -0.7 518,162 - GFF1846 0.89 +0.6 518,162 - GFF1846 0.89 -0.3 518,251 + -0.5 518,251 + -1.2 518,263 + -1.3 518,264 - -1.6 518,264 - -0.5 518,264 - +0.0 518,264 - -0.7 518,264 - -0.0 518,502 + GFF1847 0.16 +0.3 518,502 + GFF1847 0.16 -0.5 518,502 + GFF1847 0.16 +0.9 518,502 + GFF1847 0.16 -1.3 518,502 + GFF1847 0.16 +0.1 518,502 + GFF1847 0.16 +0.6 518,503 - GFF1847 0.16 -0.5 518,503 - GFF1847 0.16 +0.6 518,503 - GFF1847 0.16 +0.3 518,503 - GFF1847 0.16 -0.2 518,503 - GFF1847 0.16 -1.2 518,503 - GFF1847 0.16 -0.8 518,694 + GFF1847 0.32 -0.8 518,694 + GFF1847 0.32 +0.0 518,695 - GFF1847 0.32 -0.8 518,695 - GFF1847 0.32 -1.2 518,695 - GFF1847 0.32 -0.3 518,761 - GFF1847 0.38 -0.6 518,787 + GFF1847 0.40 +0.5 518,787 + GFF1847 0.40 -1.3 518,788 - GFF1847 0.40 +0.3 518,802 + GFF1847 0.41 -0.1 518,802 + GFF1847 0.41 -0.7 518,802 + GFF1847 0.41 +0.8 518,803 - GFF1847 0.41 +0.5 518,803 - GFF1847 0.41 -0.2 518,803 - GFF1847 0.41 -0.4 518,803 - GFF1847 0.41 -0.2 518,803 - GFF1847 0.41 -0.8 518,803 - GFF1847 0.41 -0.7 518,813 + GFF1847 0.42 +0.0 518,814 + GFF1847 0.42 +0.3 518,814 + GFF1847 0.42 -0.1 518,814 + GFF1847 0.42 -0.0 518,814 + GFF1847 0.42 -2.1 518,815 - GFF1847 0.42 -0.3 518,815 - GFF1847 0.42 -0.4 518,815 - GFF1847 0.42 +0.3 518,815 - GFF1847 0.42 +0.9 518,815 - GFF1847 0.42 -0.4 518,815 - GFF1847 0.42 -1.3 518,815 - GFF1847 0.42 -1.8 518,815 - GFF1847 0.42 +1.5 518,815 - GFF1847 0.42 -0.2 518,815 - GFF1847 0.42 +0.3 518,815 - GFF1847 0.42 -0.0 518,815 - GFF1847 0.42 -0.4 518,815 - GFF1847 0.42 -1.3 519,129 + GFF1847 0.69 -0.2 519,177 + GFF1847 0.73 -0.9 519,177 + GFF1847 0.73 +0.0 519,177 + GFF1847 0.73 -0.7 519,178 - GFF1847 0.73 +0.3 519,178 - GFF1847 0.73 -0.3 519,178 - GFF1847 0.73 +0.9 519,180 + GFF1847 0.73 +0.8 519,180 + GFF1847 0.73 -0.4 519,180 + GFF1847 0.73 -1.6 519,180 + GFF1847 0.73 -1.3 519,180 + GFF1847 0.73 -0.7 519,181 - GFF1847 0.74 -0.1 519,181 - GFF1847 0.74 +0.3 519,181 - GFF1847 0.74 -0.9 519,181 - GFF1847 0.74 -0.2 519,181 - GFF1847 0.74 -0.1 519,181 - GFF1847 0.74 -0.8 519,181 - GFF1847 0.74 -0.4 519,181 - GFF1847 0.74 +0.9 519,181 - GFF1847 0.74 -0.6 519,181 - GFF1847 0.74 -0.2 519,181 - GFF1847 0.74 +0.2 519,181 - GFF1847 0.74 +1.3 519,181 - GFF1847 0.74 -1.6 519,444 + -1.0 519,444 + -0.1 519,444 + -0.2 519,445 - -0.8 519,445 - +1.9 519,445 - +0.3 519,445 - +0.9 519,445 - +0.3 519,445 - +2.9 519,445 - +0.1 519,489 + -1.6 519,489 + -0.1 519,489 + -0.0 519,489 + -1.1 519,489 + -0.7 519,489 + +0.5 519,489 + -1.0 519,489 + -0.6 519,489 + -0.3 519,489 + -0.2 519,489 + -0.2 519,489 + +0.1 519,490 - +0.4 519,490 - +1.5 519,490 - -0.1 519,490 - -0.6 519,490 - +0.2 519,625 + +0.9 519,626 - -1.4 519,637 + -0.2 519,638 - +1.4 519,638 - -0.2 519,649 + -0.1 519,650 - -0.6 519,650 - -0.4 519,657 - -0.1 519,663 + +0.6 519,686 + -0.2 519,686 + +0.4 519,686 + -0.6 519,686 + -1.2 519,686 + -0.5 519,687 - +0.0 519,752 + -0.9 519,752 + -0.5 519,753 - +0.3 519,757 + -0.9 519,757 + -1.0 519,758 - -0.8 519,758 - +0.3 519,971 + -0.4 519,971 + -0.8 520,142 + -0.8 520,142 + +0.3 520,142 + +0.6 520,158 - +0.3 520,158 - -0.4 520,158 - +0.0 520,158 - +0.2 520,158 - +0.3 520,158 - +0.0 520,429 - GFF1848 0.14 -0.8 520,442 + GFF1848 0.15 +0.4 520,442 + GFF1848 0.15 -1.1 520,442 + GFF1848 0.15 -1.0 520,442 + GFF1848 0.15 -1.1 520,442 + GFF1848 0.15 +1.2 520,442 + GFF1848 0.15 +0.3 520,443 - GFF1848 0.15 -1.0 520,443 - GFF1848 0.15 +0.6 520,443 - GFF1848 0.15 +0.6 520,443 - GFF1848 0.15 +0.2 520,443 - GFF1848 0.15 +1.3
Or see this region's nucleotide sequence