Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1800 and GFF1801 are separated by 113 nucleotides GFF1801 and GFF1802 are separated by 31 nucleotides
GFF1800 - Glyoxylate carboligase (EC 4.1.1.47), at 462,536 to 464,329
GFF1800
GFF1801 - Transcriptional regulator, LysR family, at 464,443 to 465,345
GFF1801
GFF1802 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 465,377 to 466,876
GFF1802
Position (kb) 464
465
466 Strain fitness (log2 ratio) -2
-1
0
1
2 at 463.455 kb on + strand, within GFF1800 at 463.456 kb on - strand, within GFF1800 at 463.456 kb on - strand, within GFF1800 at 463.779 kb on + strand, within GFF1800 at 463.780 kb on - strand, within GFF1800 at 464.001 kb on + strand, within GFF1800 at 464.001 kb on + strand, within GFF1800 at 464.148 kb on + strand, within GFF1800 at 464.148 kb on + strand, within GFF1800 at 464.149 kb on - strand, within GFF1800 at 464.229 kb on + strand at 464.229 kb on + strand at 464.360 kb on + strand at 464.360 kb on + strand at 464.360 kb on + strand at 464.422 kb on + strand at 464.635 kb on + strand, within GFF1801 at 464.635 kb on + strand, within GFF1801 at 464.638 kb on + strand, within GFF1801 at 464.638 kb on + strand, within GFF1801 at 464.639 kb on - strand, within GFF1801 at 464.639 kb on - strand, within GFF1801 at 464.639 kb on - strand, within GFF1801 at 464.639 kb on - strand, within GFF1801 at 464.782 kb on + strand, within GFF1801 at 464.782 kb on + strand, within GFF1801 at 464.782 kb on + strand, within GFF1801 at 464.782 kb on + strand, within GFF1801 at 464.782 kb on + strand, within GFF1801 at 464.783 kb on - strand, within GFF1801 at 464.783 kb on - strand, within GFF1801 at 464.783 kb on - strand, within GFF1801 at 464.783 kb on - strand, within GFF1801 at 464.783 kb on - strand, within GFF1801 at 464.954 kb on - strand, within GFF1801 at 465.169 kb on + strand, within GFF1801 at 465.170 kb on - strand, within GFF1801 at 465.170 kb on - strand, within GFF1801 at 465.170 kb on - strand, within GFF1801 at 465.170 kb on - strand, within GFF1801 at 465.356 kb on + strand at 465.420 kb on + strand at 465.420 kb on + strand at 465.552 kb on + strand, within GFF1802 at 465.552 kb on + strand, within GFF1802 at 465.552 kb on + strand, within GFF1802 at 465.552 kb on + strand, within GFF1802 at 465.552 kb on + strand, within GFF1802 at 465.552 kb on + strand, within GFF1802 at 465.553 kb on - strand, within GFF1802 at 465.553 kb on - strand, within GFF1802 at 465.553 kb on - strand, within GFF1802 at 465.553 kb on - strand, within GFF1802 at 465.553 kb on - strand, within GFF1802 at 465.879 kb on + strand, within GFF1802 at 465.879 kb on + strand, within GFF1802 at 466.081 kb on - strand, within GFF1802 at 466.203 kb on + strand, within GFF1802 at 466.204 kb on - strand, within GFF1802
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 463,455 + GFF1800 0.51 -0.3 463,456 - GFF1800 0.51 +1.2 463,456 - GFF1800 0.51 -0.2 463,779 + GFF1800 0.69 -0.5 463,780 - GFF1800 0.69 -2.7 464,001 + GFF1800 0.82 -0.1 464,001 + GFF1800 0.82 -0.3 464,148 + GFF1800 0.90 +0.5 464,148 + GFF1800 0.90 +0.1 464,149 - GFF1800 0.90 +1.4 464,229 + -1.6 464,229 + -1.7 464,360 + -1.2 464,360 + -0.7 464,360 + -1.3 464,422 + -0.7 464,635 + GFF1801 0.21 +0.2 464,635 + GFF1801 0.21 -0.2 464,638 + GFF1801 0.22 -0.7 464,638 + GFF1801 0.22 -0.0 464,639 - GFF1801 0.22 -0.8 464,639 - GFF1801 0.22 -0.0 464,639 - GFF1801 0.22 +0.3 464,639 - GFF1801 0.22 -0.4 464,782 + GFF1801 0.38 +1.9 464,782 + GFF1801 0.38 -1.0 464,782 + GFF1801 0.38 +0.7 464,782 + GFF1801 0.38 -0.4 464,782 + GFF1801 0.38 -1.0 464,783 - GFF1801 0.38 +1.1 464,783 - GFF1801 0.38 -0.9 464,783 - GFF1801 0.38 -0.1 464,783 - GFF1801 0.38 -1.2 464,783 - GFF1801 0.38 -1.5 464,954 - GFF1801 0.57 -0.3 465,169 + GFF1801 0.80 -0.8 465,170 - GFF1801 0.81 +0.2 465,170 - GFF1801 0.81 -0.7 465,170 - GFF1801 0.81 -2.3 465,170 - GFF1801 0.81 +0.1 465,356 + -0.3 465,420 + -0.7 465,420 + -0.2 465,552 + GFF1802 0.12 -0.5 465,552 + GFF1802 0.12 -1.2 465,552 + GFF1802 0.12 +1.3 465,552 + GFF1802 0.12 +0.0 465,552 + GFF1802 0.12 +0.5 465,552 + GFF1802 0.12 +0.4 465,553 - GFF1802 0.12 -0.6 465,553 - GFF1802 0.12 -0.2 465,553 - GFF1802 0.12 -0.2 465,553 - GFF1802 0.12 -1.1 465,553 - GFF1802 0.12 +0.1 465,879 + GFF1802 0.33 +1.6 465,879 + GFF1802 0.33 -1.5 466,081 - GFF1802 0.47 -0.8 466,203 + GFF1802 0.55 +0.5 466,204 - GFF1802 0.55 -1.4
Or see this region's nucleotide sequence