Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1744 and GFF1745 are separated by 15 nucleotides GFF1745 and GFF1746 are separated by 39 nucleotides
GFF1744 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 403,698 to 405,272
GFF1744
GFF1745 - Acyl-CoA dehydrogenase, at 405,288 to 406,523
GFF1745
GFF1746 - BUG/TctC family periplasmic protein, at 406,563 to 407,561
GFF1746
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1 at 404.506 kb on + strand, within GFF1744 at 404.626 kb on - strand, within GFF1744 at 404.880 kb on + strand, within GFF1744 at 404.919 kb on + strand, within GFF1744 at 404.919 kb on + strand, within GFF1744 at 404.920 kb on - strand, within GFF1744 at 404.920 kb on - strand, within GFF1744 at 404.925 kb on + strand, within GFF1744 at 404.925 kb on + strand, within GFF1744 at 404.925 kb on + strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.926 kb on - strand, within GFF1744 at 404.976 kb on + strand, within GFF1744 at 405.003 kb on + strand, within GFF1744 at 405.003 kb on + strand, within GFF1744 at 405.004 kb on - strand, within GFF1744 at 405.436 kb on + strand, within GFF1745 at 405.522 kb on + strand, within GFF1745 at 405.523 kb on - strand, within GFF1745 at 405.523 kb on - strand, within GFF1745 at 405.870 kb on + strand, within GFF1745 at 405.871 kb on - strand, within GFF1745 at 405.871 kb on - strand, within GFF1745 at 405.871 kb on - strand, within GFF1745 at 405.972 kb on + strand, within GFF1745 at 406.164 kb on + strand, within GFF1745 at 406.165 kb on - strand, within GFF1745 at 406.165 kb on - strand, within GFF1745 at 406.441 kb on + strand at 406.441 kb on + strand at 406.441 kb on + strand at 406.441 kb on + strand at 406.441 kb on + strand at 406.442 kb on - strand at 406.442 kb on - strand at 406.442 kb on - strand at 406.442 kb on - strand at 406.449 kb on + strand at 406.449 kb on + strand at 406.450 kb on - strand at 406.450 kb on - strand at 406.450 kb on - strand at 406.450 kb on - strand at 406.450 kb on - strand at 406.521 kb on + strand at 406.521 kb on + strand at 406.522 kb on - strand at 406.522 kb on - strand at 406.544 kb on + strand at 406.851 kb on + strand, within GFF1746 at 406.852 kb on - strand, within GFF1746 at 406.863 kb on + strand, within GFF1746 at 406.863 kb on + strand, within GFF1746 at 406.899 kb on + strand, within GFF1746 at 406.899 kb on + strand, within GFF1746 at 406.900 kb on - strand, within GFF1746 at 406.900 kb on - strand, within GFF1746 at 406.900 kb on - strand, within GFF1746 at 406.900 kb on - strand, within GFF1746 at 406.900 kb on - strand, within GFF1746 at 406.915 kb on - strand, within GFF1746 at 407.139 kb on + strand, within GFF1746 at 407.139 kb on + strand, within GFF1746 at 407.140 kb on - strand, within GFF1746 at 407.140 kb on - strand, within GFF1746 at 407.217 kb on + strand, within GFF1746 at 407.394 kb on + strand, within GFF1746 at 407.394 kb on + strand, within GFF1746 at 407.394 kb on + strand, within GFF1746 at 407.487 kb on + strand at 407.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 404,506 + GFF1744 0.51 -0.9 404,626 - GFF1744 0.59 -0.3 404,880 + GFF1744 0.75 -0.8 404,919 + GFF1744 0.78 -0.0 404,919 + GFF1744 0.78 -1.1 404,920 - GFF1744 0.78 -0.4 404,920 - GFF1744 0.78 -0.3 404,925 + GFF1744 0.78 +0.6 404,925 + GFF1744 0.78 -0.4 404,925 + GFF1744 0.78 +0.0 404,926 - GFF1744 0.78 -0.2 404,926 - GFF1744 0.78 +1.2 404,926 - GFF1744 0.78 -0.4 404,926 - GFF1744 0.78 -1.4 404,926 - GFF1744 0.78 -0.5 404,926 - GFF1744 0.78 -0.3 404,976 + GFF1744 0.81 -0.1 405,003 + GFF1744 0.83 -0.4 405,003 + GFF1744 0.83 -0.2 405,004 - GFF1744 0.83 +0.9 405,436 + GFF1745 0.12 -0.7 405,522 + GFF1745 0.19 -0.9 405,523 - GFF1745 0.19 -0.3 405,523 - GFF1745 0.19 -0.3 405,870 + GFF1745 0.47 +0.1 405,871 - GFF1745 0.47 +0.0 405,871 - GFF1745 0.47 +0.9 405,871 - GFF1745 0.47 -2.1 405,972 + GFF1745 0.55 -0.2 406,164 + GFF1745 0.71 -2.1 406,165 - GFF1745 0.71 +0.7 406,165 - GFF1745 0.71 -0.3 406,441 + +0.2 406,441 + -0.7 406,441 + -1.0 406,441 + -0.5 406,441 + -0.6 406,442 - +0.6 406,442 - +0.8 406,442 - -0.7 406,442 - -0.3 406,449 + -0.2 406,449 + +0.2 406,450 - -0.3 406,450 - -0.7 406,450 - +0.9 406,450 - -0.4 406,450 - +0.0 406,521 + -1.7 406,521 + -1.3 406,522 - +1.1 406,522 - -0.2 406,544 + -0.6 406,851 + GFF1746 0.29 +0.1 406,852 - GFF1746 0.29 -0.3 406,863 + GFF1746 0.30 +0.1 406,863 + GFF1746 0.30 +0.1 406,899 + GFF1746 0.34 -0.2 406,899 + GFF1746 0.34 +0.0 406,900 - GFF1746 0.34 -1.7 406,900 - GFF1746 0.34 +0.2 406,900 - GFF1746 0.34 -0.1 406,900 - GFF1746 0.34 -1.1 406,900 - GFF1746 0.34 -0.6 406,915 - GFF1746 0.35 +1.2 407,139 + GFF1746 0.58 -1.3 407,139 + GFF1746 0.58 +0.0 407,140 - GFF1746 0.58 -0.3 407,140 - GFF1746 0.58 +0.1 407,217 + GFF1746 0.65 -0.7 407,394 + GFF1746 0.83 +0.3 407,394 + GFF1746 0.83 +0.7 407,394 + GFF1746 0.83 -1.2 407,487 + +0.2 407,487 + -1.7
Or see this region's nucleotide sequence