Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1717 and GFF1718 are separated by 157 nucleotides GFF1718 and GFF1719 are separated by 0 nucleotides
GFF1717 - hypothetical protein, at 364,309 to 365,679
GFF1717
GFF1718 - Malate dehydrogenase (EC 1.1.1.37), at 365,837 to 366,760
GFF1718
GFF1719 - Transcriptional regulator, LysR family, at 366,761 to 367,684
GFF1719
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 365.636 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.677 kb on + strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.678 kb on - strand at 365.776 kb on + strand at 365.776 kb on + strand at 365.777 kb on - strand at 365.777 kb on - strand at 365.795 kb on + strand at 365.942 kb on + strand, within GFF1718 at 365.942 kb on + strand, within GFF1718 at 365.942 kb on + strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 366.098 kb on + strand, within GFF1718 at 366.098 kb on + strand, within GFF1718 at 366.099 kb on - strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.153 kb on - strand, within GFF1718 at 366.153 kb on - strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.249 kb on - strand, within GFF1718 at 366.249 kb on - strand, within GFF1718 at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.758 kb on + strand at 366.758 kb on + strand at 366.758 kb on + strand at 366.759 kb on - strand at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.728 kb on + strand at 367.728 kb on + strand at 367.729 kb on - strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.752 kb on + strand at 367.752 kb on + strand at 367.753 kb on - strand at 367.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 365,636 + -1.3 365,677 + -0.9 365,677 + +2.2 365,677 + -1.2 365,677 + -1.4 365,677 + +0.3 365,677 + -1.0 365,677 + -1.0 365,677 + +0.0 365,677 + -0.3 365,677 + +0.6 365,677 + -0.3 365,677 + -0.8 365,677 + +0.3 365,677 + -0.4 365,677 + -0.3 365,677 + -1.2 365,677 + +0.3 365,677 + -0.2 365,677 + -0.1 365,677 + -0.6 365,678 - -0.8 365,678 - -0.6 365,678 - -0.6 365,678 - -0.5 365,678 - -0.2 365,678 - +1.9 365,678 - -1.0 365,678 - -0.3 365,678 - -0.6 365,678 - -0.7 365,678 - -0.9 365,678 - -0.1 365,678 - +0.8 365,678 - -1.5 365,678 - -0.1 365,678 - -1.0 365,678 - -0.1 365,678 - -1.0 365,678 - -1.3 365,678 - -0.2 365,678 - +0.7 365,678 - +0.1 365,678 - -1.4 365,678 - -0.4 365,678 - -1.8 365,776 + +0.1 365,776 + -0.0 365,777 - +1.3 365,777 - -1.1 365,795 + -1.1 365,942 + GFF1718 0.11 -0.7 365,942 + GFF1718 0.11 -0.1 365,942 + GFF1718 0.11 -0.1 365,943 - GFF1718 0.11 -0.4 365,943 - GFF1718 0.11 -1.0 365,943 - GFF1718 0.11 -0.5 366,098 + GFF1718 0.28 -0.3 366,098 + GFF1718 0.28 -1.5 366,099 - GFF1718 0.28 -0.9 366,131 + GFF1718 0.32 -0.7 366,131 + GFF1718 0.32 -0.3 366,131 + GFF1718 0.32 +0.3 366,131 + GFF1718 0.32 -0.6 366,132 - GFF1718 0.32 -0.5 366,132 - GFF1718 0.32 +0.4 366,132 - GFF1718 0.32 +0.4 366,152 + GFF1718 0.34 +1.5 366,152 + GFF1718 0.34 -1.1 366,152 + GFF1718 0.34 -0.4 366,152 + GFF1718 0.34 +0.1 366,153 - GFF1718 0.34 +0.6 366,153 - GFF1718 0.34 -2.1 366,155 + GFF1718 0.34 -0.2 366,155 + GFF1718 0.34 -0.9 366,155 + GFF1718 0.34 -0.4 366,155 + GFF1718 0.34 +1.6 366,155 + GFF1718 0.34 -0.2 366,155 + GFF1718 0.34 +0.3 366,156 - GFF1718 0.35 -1.0 366,156 - GFF1718 0.35 +0.3 366,156 - GFF1718 0.35 -0.2 366,156 - GFF1718 0.35 -0.8 366,156 - GFF1718 0.35 +0.0 366,156 - GFF1718 0.35 -0.6 366,156 - GFF1718 0.35 -1.5 366,156 - GFF1718 0.35 +0.2 366,248 + GFF1718 0.44 +0.2 366,248 + GFF1718 0.44 -0.5 366,248 + GFF1718 0.44 +0.7 366,248 + GFF1718 0.44 +0.3 366,249 - GFF1718 0.45 -0.1 366,249 - GFF1718 0.45 -0.2 366,673 + -1.7 366,673 + +0.0 366,673 + -0.2 366,673 + -0.5 366,673 + +0.2 366,673 + -0.6 366,673 + -0.5 366,673 + -0.7 366,674 - -0.9 366,674 - +0.3 366,674 - -0.3 366,674 - +1.9 366,758 + -0.7 366,758 + -0.5 366,758 + -1.2 366,759 - +0.2 366,858 + GFF1719 0.10 +0.3 366,858 + GFF1719 0.10 -0.2 366,858 + GFF1719 0.10 -0.6 366,858 + GFF1719 0.10 -1.3 366,858 + GFF1719 0.10 -1.5 366,858 + GFF1719 0.10 -1.0 366,858 + GFF1719 0.10 -0.6 366,858 + GFF1719 0.10 -0.6 366,858 + GFF1719 0.10 +2.5 366,858 + GFF1719 0.10 +0.1 366,858 + GFF1719 0.10 -1.3 366,858 + GFF1719 0.10 +0.1 366,858 + GFF1719 0.10 -0.2 366,858 + GFF1719 0.10 -0.1 366,859 - GFF1719 0.11 +0.6 366,859 - GFF1719 0.11 -0.9 366,859 - GFF1719 0.11 +3.2 366,859 - GFF1719 0.11 +0.3 366,859 - GFF1719 0.11 -1.4 366,859 - GFF1719 0.11 -1.0 366,859 - GFF1719 0.11 -0.3 366,859 - GFF1719 0.11 -0.3 366,859 - GFF1719 0.11 -1.1 367,547 + GFF1719 0.85 -1.1 367,547 + GFF1719 0.85 -1.2 367,547 + GFF1719 0.85 -0.4 367,547 + GFF1719 0.85 -0.8 367,547 + GFF1719 0.85 -0.1 367,547 + GFF1719 0.85 -0.6 367,547 + GFF1719 0.85 -1.1 367,547 + GFF1719 0.85 +0.9 367,547 + GFF1719 0.85 -0.5 367,548 - GFF1719 0.85 -0.4 367,548 - GFF1719 0.85 +0.9 367,548 - GFF1719 0.85 -0.5 367,548 - GFF1719 0.85 -0.4 367,548 - GFF1719 0.85 +0.1 367,548 - GFF1719 0.85 +0.2 367,548 - GFF1719 0.85 +0.3 367,548 - GFF1719 0.85 -0.4 367,548 - GFF1719 0.85 -0.9 367,548 - GFF1719 0.85 +0.6 367,548 - GFF1719 0.85 -2.1 367,548 - GFF1719 0.85 -0.8 367,548 - GFF1719 0.85 +0.4 367,728 + -0.6 367,728 + -0.1 367,729 - -0.1 367,748 + +0.6 367,748 + -0.4 367,748 + -1.9 367,748 + -0.2 367,748 + -1.3 367,748 + -0.1 367,748 + +0.5 367,748 + -0.5 367,749 - +0.0 367,749 - -0.3 367,749 - -0.1 367,749 - -0.5 367,749 - -0.5 367,749 - -0.6 367,749 - +0.8 367,749 - -1.1 367,749 - -0.7 367,752 + +0.5 367,752 + +1.0 367,753 - -1.1 367,753 - -0.5
Or see this region's nucleotide sequence