Strain Fitness in Variovorax sp. SCN45 around GFF1702

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1701 and GFF1702 are separated by 170 nucleotidesGFF1702 and GFF1703 are separated by 167 nucleotides GFF1701 - BUG/TctC family periplasmic protein, at 347,303 to 348,307 GFF1701 GFF1702 - hypothetical protein, at 348,478 to 349,164 GFF1702 GFF1703 - DNA for 3-methylaspartate ammonia-lyase, glutamate mutase, at 349,332 to 350,723 GFF1703 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 347.724 kb on + strand, within GFF1701at 347.724 kb on + strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.811 kb on + strand, within GFF1701at 347.812 kb on - strand, within GFF1701at 347.812 kb on - strand, within GFF1701at 347.812 kb on - strand, within GFF1701at 347.812 kb on - strand, within GFF1701at 347.841 kb on + strand, within GFF1701at 347.841 kb on + strand, within GFF1701at 347.842 kb on - strand, within GFF1701at 347.842 kb on - strand, within GFF1701at 347.895 kb on + strand, within GFF1701at 347.895 kb on + strand, within GFF1701at 347.896 kb on - strand, within GFF1701at 347.896 kb on - strand, within GFF1701at 347.896 kb on - strand, within GFF1701at 347.896 kb on - strand, within GFF1701at 347.949 kb on + strand, within GFF1701at 347.949 kb on + strand, within GFF1701at 347.950 kb on - strand, within GFF1701at 347.965 kb on - strand, within GFF1701at 347.965 kb on - strand, within GFF1701at 347.965 kb on - strand, within GFF1701at 348.013 kb on + strand, within GFF1701at 348.014 kb on - strand, within GFF1701at 348.014 kb on - strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.016 kb on - strand, within GFF1701at 348.016 kb on - strand, within GFF1701at 348.465 kb on + strandat 348.465 kb on + strandat 348.466 kb on - strandat 348.466 kb on - strandat 348.466 kb on - strandat 348.467 kb on + strandat 348.467 kb on + strandat 348.467 kb on + strandat 348.468 kb on - strandat 348.468 kb on - strandat 348.468 kb on - strandat 348.468 kb on - strandat 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 349.162 kb on + strandat 349.162 kb on + strandat 349.162 kb on + strandat 349.163 kb on - strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.482 kb on + strand, within GFF1703at 349.483 kb on - strand, within GFF1703at 349.506 kb on + strand, within GFF1703at 349.506 kb on + strand, within GFF1703at 349.507 kb on - strand, within GFF1703at 349.507 kb on - strand, within GFF1703at 349.689 kb on + strand, within GFF1703at 349.690 kb on - strand, within GFF1703at 349.690 kb on - strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.827 kb on + strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 349.828 kb on - strand, within GFF1703at 350.095 kb on - strand, within GFF1703at 350.160 kb on + strand, within GFF1703at 350.160 kb on + strand, within GFF1703at 350.160 kb on + strand, within GFF1703at 350.161 kb on - strand, within GFF1703

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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347,724 + GFF1701 0.42 -0.9
347,724 + GFF1701 0.42 -1.7
347,725 - GFF1701 0.42 +0.2
347,725 - GFF1701 0.42 +0.4
347,725 - GFF1701 0.42 -0.9
347,725 - GFF1701 0.42 +0.2
347,725 - GFF1701 0.42 +0.1
347,811 + GFF1701 0.51 +1.2
347,812 - GFF1701 0.51 -0.2
347,812 - GFF1701 0.51 -0.5
347,812 - GFF1701 0.51 -0.1
347,812 - GFF1701 0.51 +0.5
347,841 + GFF1701 0.54 +0.1
347,841 + GFF1701 0.54 -0.7
347,842 - GFF1701 0.54 -1.1
347,842 - GFF1701 0.54 -0.1
347,895 + GFF1701 0.59 -0.6
347,895 + GFF1701 0.59 -0.2
347,896 - GFF1701 0.59 +0.9
347,896 - GFF1701 0.59 -2.5
347,896 - GFF1701 0.59 +1.0
347,896 - GFF1701 0.59 -0.3
347,949 + GFF1701 0.64 -1.7
347,949 + GFF1701 0.64 -2.3
347,950 - GFF1701 0.64 -0.2
347,965 - GFF1701 0.66 -0.1
347,965 - GFF1701 0.66 -0.7
347,965 - GFF1701 0.66 -0.4
348,013 + GFF1701 0.71 -0.4
348,014 - GFF1701 0.71 -0.9
348,014 - GFF1701 0.71 +0.9
348,015 + GFF1701 0.71 +0.9
348,015 + GFF1701 0.71 -0.6
348,015 + GFF1701 0.71 -1.5
348,015 + GFF1701 0.71 -0.1
348,015 + GFF1701 0.71 +0.3
348,016 - GFF1701 0.71 -0.2
348,016 - GFF1701 0.71 -0.7
348,465 + +0.3
348,465 + -0.7
348,466 - +0.1
348,466 - -0.0
348,466 - -0.9
348,467 + -0.7
348,467 + +0.3
348,467 + -1.0
348,468 - -0.2
348,468 - -0.7
348,468 - -0.4
348,468 - -0.3
348,751 + GFF1702 0.40 -0.5
348,751 + GFF1702 0.40 +0.2
348,751 + GFF1702 0.40 -3.1
348,751 + GFF1702 0.40 -0.4
348,751 + GFF1702 0.40 -0.3
348,751 + GFF1702 0.40 -0.4
348,751 + GFF1702 0.40 -0.5
348,751 + GFF1702 0.40 -0.4
348,751 + GFF1702 0.40 +2.5
348,751 + GFF1702 0.40 -2.2
348,751 + GFF1702 0.40 -0.1
348,751 + GFF1702 0.40 -1.0
348,751 + GFF1702 0.40 -1.0
348,752 - GFF1702 0.40 -0.3
348,752 - GFF1702 0.40 -0.1
348,752 - GFF1702 0.40 -0.3
348,752 - GFF1702 0.40 -0.3
348,752 - GFF1702 0.40 +0.1
348,752 - GFF1702 0.40 -0.9
348,752 - GFF1702 0.40 +0.2
348,752 - GFF1702 0.40 -0.4
348,752 - GFF1702 0.40 -0.6
348,752 - GFF1702 0.40 +0.5
349,162 + +0.1
349,162 + -0.4
349,162 + -0.2
349,163 - +0.1
349,297 + +0.3
349,297 + -0.2
349,297 + -0.1
349,297 + +0.7
349,297 + -0.4
349,297 + +0.0
349,297 + +0.0
349,297 + -0.1
349,298 - -0.5
349,298 - -0.7
349,298 - +0.6
349,298 - -1.0
349,298 - -2.4
349,298 - -0.1
349,482 + GFF1703 0.11 -2.3
349,483 - GFF1703 0.11 -0.9
349,506 + GFF1703 0.12 +1.3
349,506 + GFF1703 0.12 +0.9
349,507 - GFF1703 0.13 +1.5
349,507 - GFF1703 0.13 -0.4
349,689 + GFF1703 0.26 -0.2
349,690 - GFF1703 0.26 -0.4
349,690 - GFF1703 0.26 -0.1
349,827 + GFF1703 0.36 -0.4
349,827 + GFF1703 0.36 +0.1
349,827 + GFF1703 0.36 +0.3
349,827 + GFF1703 0.36 -1.1
349,827 + GFF1703 0.36 -1.6
349,827 + GFF1703 0.36 -2.0
349,827 + GFF1703 0.36 -0.1
349,827 + GFF1703 0.36 -2.0
349,827 + GFF1703 0.36 -0.5
349,828 - GFF1703 0.36 -0.7
349,828 - GFF1703 0.36 +0.4
349,828 - GFF1703 0.36 -0.2
349,828 - GFF1703 0.36 +0.9
349,828 - GFF1703 0.36 -0.1
349,828 - GFF1703 0.36 -0.1
349,828 - GFF1703 0.36 +0.1
349,828 - GFF1703 0.36 -0.7
350,095 - GFF1703 0.55 -0.6
350,160 + GFF1703 0.59 -0.9
350,160 + GFF1703 0.59 +1.9
350,160 + GFF1703 0.59 +0.4
350,161 - GFF1703 0.60 -0.1

Or see this region's nucleotide sequence