Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1698 and GFF1699 are separated by 57 nucleotides GFF1699 and GFF1700 are separated by 43 nucleotides GFF1700 and GFF1701 are separated by 92 nucleotides
GFF1698 - BUG/TctC family periplasmic protein, at 344,486 to 345,445
GFF1698
GFF1699 - hypothetical protein, at 345,503 to 346,144
GFF1699
GFF1700 - hypothetical protein, at 346,188 to 347,210
GFF1700
GFF1701 - BUG/TctC family periplasmic protein, at 347,303 to 348,307
GFF1701
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 345.227 kb on + strand, within GFF1698 at 345.227 kb on + strand, within GFF1698 at 345.227 kb on + strand, within GFF1698 at 345.228 kb on - strand, within GFF1698 at 345.344 kb on + strand, within GFF1698 at 345.345 kb on - strand, within GFF1698 at 345.480 kb on + strand at 345.480 kb on + strand at 345.480 kb on + strand at 345.480 kb on + strand at 345.480 kb on + strand at 345.480 kb on + strand at 345.480 kb on + strand at 345.480 kb on + strand at 345.480 kb on + strand at 345.480 kb on + strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.481 kb on - strand at 345.495 kb on - strand at 345.495 kb on - strand at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.719 kb on + strand, within GFF1699 at 345.720 kb on - strand, within GFF1699 at 345.720 kb on - strand, within GFF1699 at 345.720 kb on - strand, within GFF1699 at 345.720 kb on - strand, within GFF1699 at 345.720 kb on - strand, within GFF1699 at 345.720 kb on - strand, within GFF1699 at 345.720 kb on - strand, within GFF1699 at 345.720 kb on - strand, within GFF1699 at 345.720 kb on - strand, within GFF1699 at 345.863 kb on + strand, within GFF1699 at 345.864 kb on - strand, within GFF1699 at 346.115 kb on + strand at 346.115 kb on + strand at 346.115 kb on + strand at 346.189 kb on + strand at 346.189 kb on + strand at 346.189 kb on + strand at 346.189 kb on + strand at 346.189 kb on + strand at 346.190 kb on - strand at 346.190 kb on - strand at 346.190 kb on - strand at 346.190 kb on - strand at 346.190 kb on - strand at 346.190 kb on - strand at 346.262 kb on + strand at 346.262 kb on + strand at 346.263 kb on - strand at 346.263 kb on - strand at 346.263 kb on - strand at 346.383 kb on + strand, within GFF1700 at 346.523 kb on + strand, within GFF1700 at 346.525 kb on + strand, within GFF1700 at 346.525 kb on + strand, within GFF1700 at 346.525 kb on + strand, within GFF1700 at 346.526 kb on - strand, within GFF1700 at 346.526 kb on - strand, within GFF1700 at 346.526 kb on - strand, within GFF1700 at 346.526 kb on - strand, within GFF1700 at 346.526 kb on - strand, within GFF1700 at 346.526 kb on - strand, within GFF1700 at 346.526 kb on - strand, within GFF1700 at 346.765 kb on + strand, within GFF1700 at 346.766 kb on - strand, within GFF1700 at 346.766 kb on - strand, within GFF1700 at 346.783 kb on + strand, within GFF1700 at 346.783 kb on + strand, within GFF1700 at 346.783 kb on + strand, within GFF1700 at 346.784 kb on - strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.972 kb on + strand, within GFF1700 at 346.973 kb on - strand, within GFF1700 at 346.973 kb on - strand, within GFF1700 at 346.973 kb on - strand, within GFF1700 at 346.973 kb on - strand, within GFF1700 at 346.973 kb on - strand, within GFF1700 at 346.973 kb on - strand, within GFF1700 at 346.973 kb on - strand, within GFF1700 at 346.973 kb on - strand, within GFF1700 at 346.973 kb on - strand, within GFF1700 at 346.981 kb on + strand, within GFF1700 at 346.982 kb on - strand, within GFF1700 at 346.999 kb on + strand, within GFF1700 at 346.999 kb on + strand, within GFF1700 at 347.000 kb on - strand, within GFF1700 at 347.083 kb on + strand, within GFF1700 at 347.122 kb on + strand at 347.122 kb on + strand at 347.122 kb on + strand at 347.122 kb on + strand at 347.122 kb on + strand at 347.122 kb on + strand at 347.122 kb on + strand at 347.122 kb on + strand at 347.122 kb on + strand at 347.123 kb on - strand at 347.123 kb on - strand at 347.123 kb on - strand at 347.123 kb on - strand at 347.123 kb on - strand at 347.123 kb on - strand at 347.123 kb on - strand at 347.164 kb on + strand at 347.164 kb on + strand at 347.164 kb on + strand at 347.165 kb on - strand at 347.165 kb on - strand at 347.165 kb on - strand at 347.165 kb on - strand at 347.309 kb on + strand at 347.310 kb on - strand at 347.310 kb on - strand at 347.310 kb on - strand at 347.310 kb on - strand at 347.310 kb on - strand at 347.724 kb on + strand, within GFF1701 at 347.724 kb on + strand, within GFF1701 at 347.725 kb on - strand, within GFF1701 at 347.725 kb on - strand, within GFF1701 at 347.725 kb on - strand, within GFF1701 at 347.725 kb on - strand, within GFF1701 at 347.725 kb on - strand, within GFF1701 at 347.811 kb on + strand, within GFF1701 at 347.812 kb on - strand, within GFF1701 at 347.812 kb on - strand, within GFF1701 at 347.812 kb on - strand, within GFF1701 at 347.812 kb on - strand, within GFF1701 at 347.841 kb on + strand, within GFF1701 at 347.841 kb on + strand, within GFF1701 at 347.842 kb on - strand, within GFF1701 at 347.842 kb on - strand, within GFF1701 at 347.895 kb on + strand, within GFF1701 at 347.895 kb on + strand, within GFF1701 at 347.896 kb on - strand, within GFF1701 at 347.896 kb on - strand, within GFF1701 at 347.896 kb on - strand, within GFF1701 at 347.896 kb on - strand, within GFF1701 at 347.949 kb on + strand, within GFF1701 at 347.949 kb on + strand, within GFF1701 at 347.950 kb on - strand, within GFF1701 at 347.965 kb on - strand, within GFF1701 at 347.965 kb on - strand, within GFF1701 at 347.965 kb on - strand, within GFF1701 at 348.013 kb on + strand, within GFF1701 at 348.014 kb on - strand, within GFF1701 at 348.014 kb on - strand, within GFF1701 at 348.015 kb on + strand, within GFF1701 at 348.015 kb on + strand, within GFF1701 at 348.015 kb on + strand, within GFF1701 at 348.015 kb on + strand, within GFF1701 at 348.015 kb on + strand, within GFF1701 at 348.016 kb on - strand, within GFF1701 at 348.016 kb on - strand, within GFF1701
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 345,227 + GFF1698 0.77 -0.3 345,227 + GFF1698 0.77 +0.3 345,227 + GFF1698 0.77 -0.9 345,228 - GFF1698 0.77 -0.0 345,344 + GFF1698 0.89 -1.2 345,345 - GFF1698 0.89 -0.7 345,480 + -0.4 345,480 + +0.4 345,480 + +0.3 345,480 + -0.9 345,480 + +0.4 345,480 + -0.9 345,480 + -0.8 345,480 + -0.2 345,480 + -0.4 345,480 + +0.5 345,481 - -0.2 345,481 - -0.8 345,481 - +0.2 345,481 - -0.9 345,481 - +0.2 345,481 - +0.2 345,481 - +1.3 345,481 - +0.9 345,481 - -0.8 345,481 - -0.4 345,481 - -0.2 345,481 - -0.3 345,481 - +0.4 345,481 - -0.1 345,481 - -0.8 345,481 - -0.6 345,481 - +0.3 345,495 - -0.1 345,495 - -0.4 345,719 + GFF1699 0.34 -0.0 345,719 + GFF1699 0.34 -0.4 345,719 + GFF1699 0.34 +0.9 345,719 + GFF1699 0.34 -1.4 345,719 + GFF1699 0.34 -0.1 345,719 + GFF1699 0.34 -0.9 345,719 + GFF1699 0.34 -0.1 345,719 + GFF1699 0.34 +0.2 345,719 + GFF1699 0.34 -0.9 345,719 + GFF1699 0.34 +0.2 345,719 + GFF1699 0.34 +1.5 345,719 + GFF1699 0.34 -0.4 345,719 + GFF1699 0.34 -0.1 345,720 - GFF1699 0.34 -1.0 345,720 - GFF1699 0.34 +0.9 345,720 - GFF1699 0.34 -0.3 345,720 - GFF1699 0.34 -0.3 345,720 - GFF1699 0.34 -0.8 345,720 - GFF1699 0.34 +1.9 345,720 - GFF1699 0.34 -0.5 345,720 - GFF1699 0.34 +0.5 345,720 - GFF1699 0.34 -1.0 345,863 + GFF1699 0.56 -0.2 345,864 - GFF1699 0.56 -0.0 346,115 + -0.9 346,115 + +0.3 346,115 + +0.9 346,189 + +3.5 346,189 + -0.5 346,189 + +1.3 346,189 + +0.8 346,189 + -0.4 346,190 - +0.3 346,190 - -0.9 346,190 - -0.4 346,190 - +0.3 346,190 - -0.6 346,190 - +1.5 346,262 + +0.1 346,262 + -0.0 346,263 - -0.9 346,263 - +0.2 346,263 - -0.1 346,383 + GFF1700 0.19 -0.1 346,523 + GFF1700 0.33 -0.3 346,525 + GFF1700 0.33 -1.0 346,525 + GFF1700 0.33 -1.3 346,525 + GFF1700 0.33 +0.1 346,526 - GFF1700 0.33 -2.5 346,526 - GFF1700 0.33 -0.2 346,526 - GFF1700 0.33 -0.3 346,526 - GFF1700 0.33 -0.4 346,526 - GFF1700 0.33 -1.2 346,526 - GFF1700 0.33 -0.1 346,526 - GFF1700 0.33 -1.0 346,765 + GFF1700 0.56 +0.2 346,766 - GFF1700 0.57 -0.3 346,766 - GFF1700 0.57 -0.6 346,783 + GFF1700 0.58 -0.4 346,783 + GFF1700 0.58 -0.0 346,783 + GFF1700 0.58 -0.1 346,784 - GFF1700 0.58 -0.7 346,972 + GFF1700 0.77 -0.7 346,972 + GFF1700 0.77 +0.2 346,972 + GFF1700 0.77 -0.3 346,972 + GFF1700 0.77 -0.2 346,972 + GFF1700 0.77 -0.5 346,972 + GFF1700 0.77 -1.9 346,972 + GFF1700 0.77 +0.4 346,972 + GFF1700 0.77 -0.6 346,972 + GFF1700 0.77 -1.4 346,972 + GFF1700 0.77 +0.5 346,972 + GFF1700 0.77 -0.4 346,972 + GFF1700 0.77 -0.1 346,972 + GFF1700 0.77 -0.7 346,972 + GFF1700 0.77 +0.1 346,972 + GFF1700 0.77 -0.6 346,972 + GFF1700 0.77 -0.2 346,972 + GFF1700 0.77 -0.0 346,972 + GFF1700 0.77 -0.4 346,973 - GFF1700 0.77 +0.2 346,973 - GFF1700 0.77 -1.3 346,973 - GFF1700 0.77 -0.5 346,973 - GFF1700 0.77 +0.2 346,973 - GFF1700 0.77 +0.3 346,973 - GFF1700 0.77 -0.3 346,973 - GFF1700 0.77 -0.5 346,973 - GFF1700 0.77 -0.3 346,973 - GFF1700 0.77 -0.4 346,981 + GFF1700 0.78 -0.1 346,982 - GFF1700 0.78 -0.3 346,999 + GFF1700 0.79 -1.5 346,999 + GFF1700 0.79 -1.3 347,000 - GFF1700 0.79 +0.5 347,083 + GFF1700 0.87 +0.5 347,122 + +1.9 347,122 + -0.9 347,122 + -0.3 347,122 + +1.3 347,122 + +1.4 347,122 + +0.4 347,122 + -0.5 347,122 + -0.2 347,122 + -0.8 347,123 - -0.5 347,123 - +0.3 347,123 - -0.8 347,123 - -0.1 347,123 - -0.1 347,123 - +0.1 347,123 - -0.3 347,164 + +0.1 347,164 + +0.3 347,164 + -0.5 347,165 - -0.1 347,165 - -0.2 347,165 - -0.3 347,165 - -0.7 347,309 + -1.9 347,310 - +0.4 347,310 - +0.9 347,310 - -1.0 347,310 - -0.2 347,310 - -0.7 347,724 + GFF1701 0.42 -0.9 347,724 + GFF1701 0.42 -1.7 347,725 - GFF1701 0.42 +0.2 347,725 - GFF1701 0.42 +0.4 347,725 - GFF1701 0.42 -0.9 347,725 - GFF1701 0.42 +0.2 347,725 - GFF1701 0.42 +0.1 347,811 + GFF1701 0.51 +1.2 347,812 - GFF1701 0.51 -0.2 347,812 - GFF1701 0.51 -0.5 347,812 - GFF1701 0.51 -0.1 347,812 - GFF1701 0.51 +0.5 347,841 + GFF1701 0.54 +0.1 347,841 + GFF1701 0.54 -0.7 347,842 - GFF1701 0.54 -1.1 347,842 - GFF1701 0.54 -0.1 347,895 + GFF1701 0.59 -0.6 347,895 + GFF1701 0.59 -0.2 347,896 - GFF1701 0.59 +0.9 347,896 - GFF1701 0.59 -2.5 347,896 - GFF1701 0.59 +1.0 347,896 - GFF1701 0.59 -0.3 347,949 + GFF1701 0.64 -1.7 347,949 + GFF1701 0.64 -2.3 347,950 - GFF1701 0.64 -0.2 347,965 - GFF1701 0.66 -0.1 347,965 - GFF1701 0.66 -0.7 347,965 - GFF1701 0.66 -0.4 348,013 + GFF1701 0.71 -0.4 348,014 - GFF1701 0.71 -0.9 348,014 - GFF1701 0.71 +0.9 348,015 + GFF1701 0.71 +0.9 348,015 + GFF1701 0.71 -0.6 348,015 + GFF1701 0.71 -1.5 348,015 + GFF1701 0.71 -0.1 348,015 + GFF1701 0.71 +0.3 348,016 - GFF1701 0.71 -0.2 348,016 - GFF1701 0.71 -0.7
Or see this region's nucleotide sequence