Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1686 and GFF1687 overlap by 4 nucleotides GFF1687 and GFF1688 are separated by 19 nucleotides GFF1688 and GFF1689 are separated by 39 nucleotides
GFF1686 - Uncharacterized protein Bsu YraM, at 330,647 to 331,819
GFF1686
GFF1687 - BUG/TctC family periplasmic protein, at 331,816 to 332,793
GFF1687
GFF1688 - FIG00828468: hypothetical protein, at 332,813 to 334,240
GFF1688
GFF1689 - BUG/TctC family periplasmic protein, at 334,280 to 335,272
GFF1689
Position (kb) 332
333
334
335 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 331.872 kb on + strand at 331.969 kb on + strand, within GFF1687 at 331.969 kb on + strand, within GFF1687 at 331.970 kb on - strand, within GFF1687 at 332.131 kb on + strand, within GFF1687 at 332.255 kb on - strand, within GFF1687 at 332.372 kb on - strand, within GFF1687 at 332.372 kb on - strand, within GFF1687 at 333.122 kb on + strand, within GFF1688 at 333.123 kb on - strand, within GFF1688 at 333.240 kb on - strand, within GFF1688 at 333.434 kb on + strand, within GFF1688 at 333.488 kb on + strand, within GFF1688 at 333.489 kb on - strand, within GFF1688 at 333.515 kb on + strand, within GFF1688 at 333.515 kb on + strand, within GFF1688 at 333.656 kb on + strand, within GFF1688 at 333.774 kb on - strand, within GFF1688 at 333.839 kb on + strand, within GFF1688 at 333.839 kb on + strand, within GFF1688 at 333.839 kb on + strand, within GFF1688 at 334.101 kb on - strand at 334.101 kb on - strand at 334.538 kb on + strand, within GFF1689 at 334.565 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.567 kb on + strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.568 kb on - strand, within GFF1689 at 334.628 kb on + strand, within GFF1689 at 334.828 kb on - strand, within GFF1689 at 334.847 kb on + strand, within GFF1689 at 334.847 kb on + strand, within GFF1689 at 334.847 kb on + strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 331,872 + +0.6 331,969 + GFF1687 0.16 +1.0 331,969 + GFF1687 0.16 -2.0 331,970 - GFF1687 0.16 +0.3 332,131 + GFF1687 0.32 -0.9 332,255 - GFF1687 0.45 +0.0 332,372 - GFF1687 0.57 -1.1 332,372 - GFF1687 0.57 -0.3 333,122 + GFF1688 0.22 -0.4 333,123 - GFF1688 0.22 -0.7 333,240 - GFF1688 0.30 -0.9 333,434 + GFF1688 0.43 -1.8 333,488 + GFF1688 0.47 +0.1 333,489 - GFF1688 0.47 -0.5 333,515 + GFF1688 0.49 +0.3 333,515 + GFF1688 0.49 -0.5 333,656 + GFF1688 0.59 -1.4 333,774 - GFF1688 0.67 -1.1 333,839 + GFF1688 0.72 +0.3 333,839 + GFF1688 0.72 +0.6 333,839 + GFF1688 0.72 +0.3 334,101 - +0.4 334,101 - -1.6 334,538 + GFF1689 0.26 +0.9 334,565 + GFF1689 0.29 -0.0 334,567 + GFF1689 0.29 -1.1 334,567 + GFF1689 0.29 -0.0 334,567 + GFF1689 0.29 -1.7 334,567 + GFF1689 0.29 -0.2 334,567 + GFF1689 0.29 -0.3 334,567 + GFF1689 0.29 -0.6 334,567 + GFF1689 0.29 -0.3 334,567 + GFF1689 0.29 -0.8 334,567 + GFF1689 0.29 -0.4 334,567 + GFF1689 0.29 +0.0 334,567 + GFF1689 0.29 -0.4 334,567 + GFF1689 0.29 -0.9 334,567 + GFF1689 0.29 +0.6 334,567 + GFF1689 0.29 -0.6 334,567 + GFF1689 0.29 +0.0 334,567 + GFF1689 0.29 +0.0 334,567 + GFF1689 0.29 +0.5 334,567 + GFF1689 0.29 +0.1 334,567 + GFF1689 0.29 -0.2 334,567 + GFF1689 0.29 +1.2 334,567 + GFF1689 0.29 -0.4 334,568 - GFF1689 0.29 +0.1 334,568 - GFF1689 0.29 -0.6 334,568 - GFF1689 0.29 +3.1 334,568 - GFF1689 0.29 -0.1 334,568 - GFF1689 0.29 -0.9 334,568 - GFF1689 0.29 -0.6 334,568 - GFF1689 0.29 -0.1 334,568 - GFF1689 0.29 -0.7 334,568 - GFF1689 0.29 +0.3 334,568 - GFF1689 0.29 +0.0 334,568 - GFF1689 0.29 -0.4 334,568 - GFF1689 0.29 +1.4 334,568 - GFF1689 0.29 -0.5 334,568 - GFF1689 0.29 +0.7 334,568 - GFF1689 0.29 +0.2 334,568 - GFF1689 0.29 +0.3 334,568 - GFF1689 0.29 -0.1 334,568 - GFF1689 0.29 +0.0 334,568 - GFF1689 0.29 +0.2 334,568 - GFF1689 0.29 -0.8 334,568 - GFF1689 0.29 -0.1 334,568 - GFF1689 0.29 -0.9 334,568 - GFF1689 0.29 -0.3 334,568 - GFF1689 0.29 -0.1 334,628 + GFF1689 0.35 -0.6 334,828 - GFF1689 0.55 -0.3 334,847 + GFF1689 0.57 -0.6 334,847 + GFF1689 0.57 +1.0 334,847 + GFF1689 0.57 -0.3 334,848 - GFF1689 0.57 -1.3 334,848 - GFF1689 0.57 +0.7 334,848 - GFF1689 0.57 -0.1 334,848 - GFF1689 0.57 +0.9 334,848 - GFF1689 0.57 -0.9 334,848 - GFF1689 0.57 +0.1
Or see this region's nucleotide sequence