Strain Fitness in Variovorax sp. SCN45 around GFF1650

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1648 and GFF1649 are separated by 159 nucleotidesGFF1649 and GFF1650 are separated by 104 nucleotidesGFF1650 and GFF1651 are separated by 96 nucleotidesGFF1651 and GFF1652 are separated by 29 nucleotides GFF1648 - Ligand-binding SRPBCC domain protein family, at 288,320 to 288,766 GFF1648 GFF1649 - hypothetical protein, at 288,926 to 289,591 GFF1649 GFF1650 - NmrA-like, at 289,696 to 290,781 GFF1650 GFF1651 - Transcriptional regulator, AcrR family, at 290,878 to 291,465 GFF1651 GFF1652 - Uncharacterized MFS-type transporter, at 291,495 to 292,736 GFF1652 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1 2at 288.708 kb on + strand, within GFF1648at 288.807 kb on + strandat 288.808 kb on - strandat 288.883 kb on + strandat 288.883 kb on + strandat 288.884 kb on - strandat 288.983 kb on + strandat 288.983 kb on + strandat 288.983 kb on + strandat 288.983 kb on + strandat 288.983 kb on + strandat 288.983 kb on + strandat 288.984 kb on - strandat 288.984 kb on - strandat 288.984 kb on - strandat 288.984 kb on - strandat 288.984 kb on - strandat 288.984 kb on - strandat 288.984 kb on - strandat 288.984 kb on - strandat 289.158 kb on - strand, within GFF1649at 289.276 kb on + strand, within GFF1649at 289.287 kb on + strand, within GFF1649at 289.287 kb on + strand, within GFF1649at 289.287 kb on + strand, within GFF1649at 289.288 kb on - strand, within GFF1649at 289.288 kb on - strand, within GFF1649at 289.288 kb on - strand, within GFF1649at 289.288 kb on - strand, within GFF1649at 289.489 kb on + strand, within GFF1649at 289.589 kb on + strandat 289.589 kb on + strandat 289.589 kb on + strandat 289.590 kb on - strandat 289.719 kb on + strandat 289.720 kb on - strandat 289.753 kb on - strandat 289.790 kb on - strandat 289.975 kb on + strand, within GFF1650at 289.975 kb on + strand, within GFF1650at 289.975 kb on + strand, within GFF1650at 289.975 kb on + strand, within GFF1650at 289.976 kb on - strand, within GFF1650at 289.993 kb on + strand, within GFF1650at 289.993 kb on + strand, within GFF1650at 289.994 kb on - strand, within GFF1650at 289.994 kb on - strand, within GFF1650at 290.047 kb on + strand, within GFF1650at 290.048 kb on - strand, within GFF1650at 290.095 kb on + strand, within GFF1650at 290.095 kb on + strand, within GFF1650at 290.152 kb on + strand, within GFF1650at 290.188 kb on + strand, within GFF1650at 290.188 kb on + strand, within GFF1650at 290.189 kb on - strand, within GFF1650at 290.189 kb on - strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.314 kb on + strand, within GFF1650at 290.315 kb on - strand, within GFF1650at 290.315 kb on - strand, within GFF1650at 290.315 kb on - strand, within GFF1650at 290.389 kb on + strand, within GFF1650at 290.390 kb on - strand, within GFF1650at 290.441 kb on - strand, within GFF1650at 290.460 kb on + strand, within GFF1650at 290.460 kb on + strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.461 kb on - strand, within GFF1650at 290.464 kb on + strand, within GFF1650at 290.465 kb on - strand, within GFF1650at 290.510 kb on - strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.605 kb on + strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.606 kb on - strand, within GFF1650at 290.779 kb on + strandat 290.779 kb on + strandat 290.779 kb on + strandat 290.779 kb on + strandat 290.811 kb on + strandat 290.885 kb on - strandat 290.960 kb on + strand, within GFF1651at 290.961 kb on - strand, within GFF1651at 291.019 kb on + strand, within GFF1651at 291.019 kb on + strand, within GFF1651at 291.019 kb on + strand, within GFF1651at 291.154 kb on + strand, within GFF1651at 291.155 kb on - strand, within GFF1651at 291.155 kb on - strand, within GFF1651at 291.155 kb on - strand, within GFF1651at 291.320 kb on + strand, within GFF1651at 291.321 kb on - strand, within GFF1651at 291.321 kb on - strand, within GFF1651at 291.403 kb on + strand, within GFF1651at 291.404 kb on - strand, within GFF1651at 291.463 kb on + strandat 291.463 kb on + strandat 291.463 kb on + strandat 291.464 kb on - strandat 291.464 kb on - strandat 291.464 kb on - strandat 291.464 kb on - strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.685 kb on - strand, within GFF1652

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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288,708 + GFF1648 0.87 -0.1
288,807 + -0.0
288,808 - -0.2
288,883 + -0.4
288,883 + +1.9
288,884 - -1.7
288,983 + -0.8
288,983 + -0.7
288,983 + -0.2
288,983 + -0.1
288,983 + +0.7
288,983 + -1.3
288,984 - +0.0
288,984 - +0.5
288,984 - -0.5
288,984 - -0.9
288,984 - -0.6
288,984 - -0.7
288,984 - +0.9
288,984 - -0.3
289,158 - GFF1649 0.35 +0.4
289,276 + GFF1649 0.53 +1.3
289,287 + GFF1649 0.54 +2.3
289,287 + GFF1649 0.54 -1.6
289,287 + GFF1649 0.54 -0.7
289,288 - GFF1649 0.54 -1.3
289,288 - GFF1649 0.54 -0.1
289,288 - GFF1649 0.54 -1.4
289,288 - GFF1649 0.54 -0.7
289,489 + GFF1649 0.85 +0.9
289,589 + -0.9
289,589 + -0.4
289,589 + -0.7
289,590 - -0.3
289,719 + +0.9
289,720 - -0.7
289,753 - -0.9
289,790 - -0.3
289,975 + GFF1650 0.26 +0.7
289,975 + GFF1650 0.26 +0.9
289,975 + GFF1650 0.26 -1.3
289,975 + GFF1650 0.26 -0.1
289,976 - GFF1650 0.26 -1.6
289,993 + GFF1650 0.27 -1.0
289,993 + GFF1650 0.27 -0.3
289,994 - GFF1650 0.27 +0.9
289,994 - GFF1650 0.27 -1.4
290,047 + GFF1650 0.32 +0.3
290,048 - GFF1650 0.32 -0.2
290,095 + GFF1650 0.37 -1.1
290,095 + GFF1650 0.37 -0.3
290,152 + GFF1650 0.42 +0.1
290,188 + GFF1650 0.45 -2.1
290,188 + GFF1650 0.45 -0.1
290,189 - GFF1650 0.45 -1.0
290,189 - GFF1650 0.45 -0.2
290,314 + GFF1650 0.57 -0.7
290,314 + GFF1650 0.57 +0.6
290,314 + GFF1650 0.57 -1.2
290,314 + GFF1650 0.57 -2.2
290,314 + GFF1650 0.57 -1.7
290,315 - GFF1650 0.57 -0.8
290,315 - GFF1650 0.57 -0.6
290,315 - GFF1650 0.57 -0.7
290,389 + GFF1650 0.64 -1.0
290,390 - GFF1650 0.64 +1.0
290,441 - GFF1650 0.69 +0.1
290,460 + GFF1650 0.70 -0.6
290,460 + GFF1650 0.70 +0.3
290,461 - GFF1650 0.70 -0.8
290,461 - GFF1650 0.70 -0.4
290,461 - GFF1650 0.70 +0.1
290,461 - GFF1650 0.70 +0.4
290,461 - GFF1650 0.70 +0.4
290,464 + GFF1650 0.71 +0.2
290,465 - GFF1650 0.71 -0.6
290,510 - GFF1650 0.75 -0.4
290,605 + GFF1650 0.84 +0.2
290,605 + GFF1650 0.84 -0.1
290,605 + GFF1650 0.84 -0.4
290,605 + GFF1650 0.84 -0.3
290,606 - GFF1650 0.84 -0.2
290,606 - GFF1650 0.84 -1.3
290,606 - GFF1650 0.84 +0.3
290,606 - GFF1650 0.84 +0.7
290,779 + +0.2
290,779 + -1.5
290,779 + +0.4
290,779 + +0.1
290,811 + -0.4
290,885 - +0.9
290,960 + GFF1651 0.14 +0.3
290,961 - GFF1651 0.14 +0.9
291,019 + GFF1651 0.24 -0.7
291,019 + GFF1651 0.24 -0.6
291,019 + GFF1651 0.24 -0.3
291,154 + GFF1651 0.47 -1.2
291,155 - GFF1651 0.47 -0.2
291,155 - GFF1651 0.47 +0.4
291,155 - GFF1651 0.47 -0.3
291,320 + GFF1651 0.75 +0.4
291,321 - GFF1651 0.75 +0.3
291,321 - GFF1651 0.75 +0.1
291,403 + GFF1651 0.89 -0.4
291,404 - GFF1651 0.89 -0.5
291,463 + -0.9
291,463 + -0.5
291,463 + +0.1
291,464 - -0.4
291,464 - -0.9
291,464 - -0.9
291,464 - -1.3
291,496 + +0.4
291,496 + -0.9
291,496 + -0.3
291,496 + +1.9
291,497 - -0.7
291,497 - -0.6
291,497 - -0.9
291,685 - GFF1652 0.15 -0.3

Or see this region's nucleotide sequence