Strain Fitness in Variovorax sp. SCN45 around GFF1640

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1639 and GFF1640 overlap by 4 nucleotidesGFF1640 and GFF1641 overlap by 1 nucleotides GFF1639 - Polyketide synthase modules and related proteins, at 268,110 to 271,196 GFF1639 GFF1640 - Polyketide synthase modules and related proteins, at 271,193 to 278,275 GFF1640 GFF1641 - Polyketide synthase modules and related proteins, at 278,275 to 283,587 GFF1641 Position (kb) 271 272 273 274 275 276 277 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 270.635 kb on - strand, within GFF1639at 270.700 kb on + strand, within GFF1639at 270.743 kb on - strand, within GFF1639at 271.309 kb on - strandat 271.449 kb on + strandat 271.695 kb on + strandat 271.696 kb on - strandat 271.743 kb on + strandat 271.743 kb on + strandat 271.744 kb on - strandat 271.932 kb on + strand, within GFF1640at 271.933 kb on - strand, within GFF1640at 271.948 kb on - strand, within GFF1640at 271.948 kb on - strand, within GFF1640at 271.948 kb on - strand, within GFF1640at 271.995 kb on + strand, within GFF1640at 272.103 kb on + strand, within GFF1640at 272.437 kb on - strand, within GFF1640at 272.451 kb on + strand, within GFF1640at 272.451 kb on + strand, within GFF1640at 272.914 kb on + strand, within GFF1640at 273.058 kb on - strand, within GFF1640at 273.115 kb on - strand, within GFF1640at 273.126 kb on + strand, within GFF1640at 273.126 kb on + strand, within GFF1640at 273.135 kb on + strand, within GFF1640at 273.135 kb on + strand, within GFF1640at 273.135 kb on + strand, within GFF1640at 273.136 kb on - strand, within GFF1640at 273.190 kb on - strand, within GFF1640at 273.807 kb on + strand, within GFF1640at 273.807 kb on + strand, within GFF1640at 273.807 kb on + strand, within GFF1640at 274.299 kb on + strand, within GFF1640at 274.299 kb on + strand, within GFF1640at 274.788 kb on + strand, within GFF1640at 274.789 kb on - strand, within GFF1640at 274.789 kb on - strand, within GFF1640at 274.845 kb on + strand, within GFF1640at 274.845 kb on + strand, within GFF1640at 274.845 kb on + strand, within GFF1640at 274.846 kb on - strand, within GFF1640at 275.499 kb on - strand, within GFF1640at 275.499 kb on - strand, within GFF1640at 275.529 kb on + strand, within GFF1640at 275.529 kb on + strand, within GFF1640at 275.529 kb on + strand, within GFF1640at 275.530 kb on - strand, within GFF1640at 275.530 kb on - strand, within GFF1640at 275.530 kb on - strand, within GFF1640at 275.530 kb on - strand, within GFF1640at 276.342 kb on + strand, within GFF1640at 276.342 kb on + strand, within GFF1640at 276.414 kb on + strand, within GFF1640at 276.415 kb on - strand, within GFF1640at 277.050 kb on + strand, within GFF1640at 277.050 kb on + strand, within GFF1640at 277.051 kb on - strand, within GFF1640at 277.051 kb on - strand, within GFF1640at 277.593 kb on + strandat 277.755 kb on + strandat 277.756 kb on - strandat 277.756 kb on - strandat 277.869 kb on + strandat 278.074 kb on - strandat 278.074 kb on - strandat 278.637 kb on - strandat 278.744 kb on + strandat 278.744 kb on + strandat 278.744 kb on + strandat 278.744 kb on + strandat 278.745 kb on - strandat 278.745 kb on - strandat 278.745 kb on - strandat 278.819 kb on + strand, within GFF1641at 278.820 kb on - strand, within GFF1641at 278.820 kb on - strand, within GFF1641at 278.820 kb on - strand, within GFF1641at 278.967 kb on - strand, within GFF1641at 279.086 kb on + strand, within GFF1641at 279.116 kb on + strand, within GFF1641at 279.116 kb on + strand, within GFF1641at 279.117 kb on - strand, within GFF1641at 279.209 kb on + strand, within GFF1641at 279.209 kb on + strand, within GFF1641at 279.210 kb on - strand, within GFF1641at 279.210 kb on - strand, within GFF1641

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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270,635 - GFF1639 0.82 -1.3
270,700 + GFF1639 0.84 +0.5
270,743 - GFF1639 0.85 -0.7
271,309 - +0.6
271,449 + -0.5
271,695 + -0.1
271,696 - -1.1
271,743 + -0.0
271,743 + -0.8
271,744 - -0.4
271,932 + GFF1640 0.10 +0.1
271,933 - GFF1640 0.10 +1.3
271,948 - GFF1640 0.11 -1.4
271,948 - GFF1640 0.11 -0.7
271,948 - GFF1640 0.11 -0.6
271,995 + GFF1640 0.11 -0.3
272,103 + GFF1640 0.13 -0.4
272,437 - GFF1640 0.18 +0.3
272,451 + GFF1640 0.18 +0.9
272,451 + GFF1640 0.18 -0.2
272,914 + GFF1640 0.24 -0.5
273,058 - GFF1640 0.26 +0.0
273,115 - GFF1640 0.27 +0.0
273,126 + GFF1640 0.27 -1.1
273,126 + GFF1640 0.27 +0.4
273,135 + GFF1640 0.27 -2.0
273,135 + GFF1640 0.27 -0.7
273,135 + GFF1640 0.27 +1.0
273,136 - GFF1640 0.27 -0.5
273,190 - GFF1640 0.28 -0.7
273,807 + GFF1640 0.37 -0.9
273,807 + GFF1640 0.37 -1.0
273,807 + GFF1640 0.37 +0.2
274,299 + GFF1640 0.44 -0.6
274,299 + GFF1640 0.44 -1.0
274,788 + GFF1640 0.51 +0.1
274,789 - GFF1640 0.51 -1.6
274,789 - GFF1640 0.51 +0.2
274,845 + GFF1640 0.52 -0.6
274,845 + GFF1640 0.52 +0.1
274,845 + GFF1640 0.52 -1.3
274,846 - GFF1640 0.52 -0.3
275,499 - GFF1640 0.61 +0.1
275,499 - GFF1640 0.61 -1.1
275,529 + GFF1640 0.61 -0.4
275,529 + GFF1640 0.61 -0.7
275,529 + GFF1640 0.61 -0.2
275,530 - GFF1640 0.61 -0.3
275,530 - GFF1640 0.61 -0.5
275,530 - GFF1640 0.61 -0.6
275,530 - GFF1640 0.61 -0.2
276,342 + GFF1640 0.73 -1.6
276,342 + GFF1640 0.73 -0.1
276,414 + GFF1640 0.74 -0.6
276,415 - GFF1640 0.74 +1.1
277,050 + GFF1640 0.83 -0.4
277,050 + GFF1640 0.83 +0.6
277,051 - GFF1640 0.83 -1.3
277,051 - GFF1640 0.83 +0.3
277,593 + -0.4
277,755 + +0.1
277,756 - -0.6
277,756 - +0.3
277,869 + -0.5
278,074 - -0.1
278,074 - -2.8
278,637 - +0.6
278,744 + +0.1
278,744 + -0.4
278,744 + +0.2
278,744 + +1.9
278,745 - -0.1
278,745 - +0.8
278,745 - -0.5
278,819 + GFF1641 0.10 +0.2
278,820 - GFF1641 0.10 -0.1
278,820 - GFF1641 0.10 -0.1
278,820 - GFF1641 0.10 +0.7
278,967 - GFF1641 0.13 +0.3
279,086 + GFF1641 0.15 +0.2
279,116 + GFF1641 0.16 +0.3
279,116 + GFF1641 0.16 -0.1
279,117 - GFF1641 0.16 -0.1
279,209 + GFF1641 0.18 -1.1
279,209 + GFF1641 0.18 -0.1
279,210 - GFF1641 0.18 +0.6
279,210 - GFF1641 0.18 +0.3

Or see this region's nucleotide sequence