Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1638 and GFF1639 overlap by 4 nucleotides GFF1639 and GFF1640 overlap by 4 nucleotides
GFF1638 - Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 264,832 to 268,113
GFF1638
GFF1639 - Polyketide synthase modules and related proteins, at 268,110 to 271,196
GFF1639
GFF1640 - Polyketide synthase modules and related proteins, at 271,193 to 278,275
GFF1640
Position (kb) 268
269
270
271
272 Strain fitness (log2 ratio) -1
0
1 at 267.244 kb on + strand, within GFF1638 at 267.534 kb on - strand, within GFF1638 at 267.534 kb on - strand, within GFF1638 at 267.543 kb on - strand, within GFF1638 at 267.599 kb on + strand, within GFF1638 at 268.043 kb on + strand at 268.044 kb on - strand at 268.044 kb on - strand at 268.044 kb on - strand at 268.781 kb on - strand, within GFF1639 at 268.781 kb on - strand, within GFF1639 at 268.894 kb on + strand, within GFF1639 at 269.057 kb on - strand, within GFF1639 at 269.057 kb on - strand, within GFF1639 at 269.065 kb on + strand, within GFF1639 at 269.066 kb on - strand, within GFF1639 at 269.070 kb on - strand, within GFF1639 at 269.407 kb on + strand, within GFF1639 at 269.407 kb on + strand, within GFF1639 at 269.408 kb on - strand, within GFF1639 at 269.408 kb on - strand, within GFF1639 at 269.408 kb on - strand, within GFF1639 at 269.470 kb on + strand, within GFF1639 at 269.471 kb on - strand, within GFF1639 at 269.471 kb on - strand, within GFF1639 at 269.480 kb on - strand, within GFF1639 at 269.882 kb on + strand, within GFF1639 at 269.883 kb on - strand, within GFF1639 at 269.883 kb on - strand, within GFF1639 at 269.883 kb on - strand, within GFF1639 at 270.635 kb on - strand, within GFF1639 at 270.700 kb on + strand, within GFF1639 at 270.743 kb on - strand, within GFF1639 at 271.309 kb on - strand at 271.449 kb on + strand at 271.695 kb on + strand at 271.696 kb on - strand at 271.743 kb on + strand at 271.743 kb on + strand at 271.744 kb on - strand at 271.932 kb on + strand, within GFF1640 at 271.933 kb on - strand, within GFF1640 at 271.948 kb on - strand, within GFF1640 at 271.948 kb on - strand, within GFF1640 at 271.948 kb on - strand, within GFF1640 at 271.995 kb on + strand, within GFF1640 at 272.103 kb on + strand, within GFF1640
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 267,244 + GFF1638 0.73 -0.3 267,534 - GFF1638 0.82 +0.3 267,534 - GFF1638 0.82 -0.5 267,543 - GFF1638 0.83 -0.4 267,599 + GFF1638 0.84 -0.6 268,043 + -0.8 268,044 - +0.4 268,044 - +0.3 268,044 - -0.6 268,781 - GFF1639 0.22 -0.4 268,781 - GFF1639 0.22 +0.1 268,894 + GFF1639 0.25 +0.3 269,057 - GFF1639 0.31 -0.2 269,057 - GFF1639 0.31 -0.6 269,065 + GFF1639 0.31 -0.5 269,066 - GFF1639 0.31 +0.4 269,070 - GFF1639 0.31 -0.2 269,407 + GFF1639 0.42 +0.1 269,407 + GFF1639 0.42 -0.3 269,408 - GFF1639 0.42 +0.3 269,408 - GFF1639 0.42 -0.4 269,408 - GFF1639 0.42 -1.6 269,470 + GFF1639 0.44 +0.7 269,471 - GFF1639 0.44 -0.1 269,471 - GFF1639 0.44 -0.3 269,480 - GFF1639 0.44 -0.4 269,882 + GFF1639 0.57 -0.1 269,883 - GFF1639 0.57 -0.5 269,883 - GFF1639 0.57 +0.1 269,883 - GFF1639 0.57 -1.1 270,635 - GFF1639 0.82 -1.3 270,700 + GFF1639 0.84 +0.5 270,743 - GFF1639 0.85 -0.7 271,309 - +0.6 271,449 + -0.5 271,695 + -0.1 271,696 - -1.1 271,743 + -0.0 271,743 + -0.8 271,744 - -0.4 271,932 + GFF1640 0.10 +0.1 271,933 - GFF1640 0.10 +1.3 271,948 - GFF1640 0.11 -1.4 271,948 - GFF1640 0.11 -0.7 271,948 - GFF1640 0.11 -0.6 271,995 + GFF1640 0.11 -0.3 272,103 + GFF1640 0.13 -0.4
Or see this region's nucleotide sequence