Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1627 and GFF1628 are separated by 41 nucleotides GFF1628 and GFF1629 are separated by 177 nucleotides GFF1629 and GFF1630 are separated by 65 nucleotides
GFF1627 - ABC-type siderophore export system, fused ATPase and permease components, at 227,588 to 229,267
GFF1627
GFF1628 - no description, at 229,309 to 229,548
GFF1628
GFF1629 - Ferric reductase (1.6.99.14), at 229,726 to 230,478
GFF1629
GFF1630 - Esterase/lipase, at 230,544 to 232,628
GFF1630
Position (kb) 229
230
231 Strain fitness (log2 ratio) -1
0
1 at 229.274 kb on + strand at 229.275 kb on - strand at 229.939 kb on + strand, within GFF1629 at 230.062 kb on - strand, within GFF1629 at 230.404 kb on + strand at 230.405 kb on - strand at 230.405 kb on - strand at 230.405 kb on - strand at 230.407 kb on + strand at 230.407 kb on + strand at 230.408 kb on - strand at 230.428 kb on + strand at 230.428 kb on + strand at 230.510 kb on + strand at 230.510 kb on + strand at 230.652 kb on + strand at 230.797 kb on - strand, within GFF1630 at 230.815 kb on - strand, within GFF1630 at 230.815 kb on - strand, within GFF1630 at 231.109 kb on - strand, within GFF1630 at 231.109 kb on - strand, within GFF1630 at 231.207 kb on + strand, within GFF1630 at 231.208 kb on - strand, within GFF1630 at 231.306 kb on + strand, within GFF1630 at 231.336 kb on + strand, within GFF1630 at 231.336 kb on + strand, within GFF1630 at 231.337 kb on - strand, within GFF1630
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 229,274 + -0.4 229,275 - -1.4 229,939 + GFF1629 0.28 +0.6 230,062 - GFF1629 0.45 +0.5 230,404 + +0.0 230,405 - +0.3 230,405 - -0.1 230,405 - -1.6 230,407 + +0.9 230,407 + +0.2 230,408 - -0.4 230,428 + -1.1 230,428 + +0.0 230,510 + +0.3 230,510 + +0.1 230,652 + -0.3 230,797 - GFF1630 0.12 -0.2 230,815 - GFF1630 0.13 -0.7 230,815 - GFF1630 0.13 -0.7 231,109 - GFF1630 0.27 +0.2 231,109 - GFF1630 0.27 -0.7 231,207 + GFF1630 0.32 -0.7 231,208 - GFF1630 0.32 +0.8 231,306 + GFF1630 0.37 -0.5 231,336 + GFF1630 0.38 -0.9 231,336 + GFF1630 0.38 -0.5 231,337 - GFF1630 0.38 -0.5
Or see this region's nucleotide sequence