Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF155 and GFF156 are separated by 16 nucleotides GFF156 and GFF157 overlap by 4 nucleotides GFF157 and GFF158 overlap by 4 nucleotides GFF158 and GFF159 overlap by 13 nucleotides
GFF155 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 183,212 to 184,783
GFF155
GFF156 - Glycosyl transferase, group 2 family, at 184,800 to 185,498
GFF156
GFF157 - Methyltransferase type 12, at 185,495 to 186,100
GFF157
GFF158 - LmbE-like protein, at 186,097 to 186,858
GFF158
GFF159 - Acyl-CoA dehydrogenase/oxidase domain protein, at 186,846 to 187,865
GFF159
Position (kb) 185
186
187 Strain fitness (log2 ratio) -2
-1
0
1
2 at 184.499 kb on + strand, within GFF155 at 184.500 kb on - strand, within GFF155 at 184.500 kb on - strand, within GFF155 at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.658 kb on - strand at 184.658 kb on - strand at 184.658 kb on - strand at 184.658 kb on - strand at 184.658 kb on - strand at 184.907 kb on + strand, within GFF156 at 184.908 kb on - strand, within GFF156 at 184.908 kb on - strand, within GFF156 at 185.083 kb on + strand, within GFF156 at 185.083 kb on + strand, within GFF156 at 185.084 kb on - strand, within GFF156 at 185.084 kb on - strand, within GFF156 at 185.746 kb on - strand, within GFF157 at 185.958 kb on + strand, within GFF157 at 185.958 kb on + strand, within GFF157 at 185.959 kb on - strand, within GFF157 at 185.971 kb on - strand, within GFF157 at 185.971 kb on - strand, within GFF157 at 186.021 kb on + strand, within GFF157 at 186.022 kb on - strand, within GFF157 at 186.042 kb on + strand at 186.043 kb on - strand at 186.043 kb on - strand at 186.063 kb on + strand at 186.063 kb on + strand at 186.063 kb on + strand at 186.063 kb on + strand at 186.064 kb on - strand at 186.064 kb on - strand at 186.064 kb on - strand at 186.078 kb on + strand at 186.078 kb on + strand at 186.116 kb on + strand at 186.116 kb on + strand at 186.117 kb on - strand at 186.117 kb on - strand at 186.117 kb on - strand at 186.117 kb on - strand at 186.847 kb on + strand at 186.848 kb on - strand at 186.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 184,499 + GFF155 0.82 +2.3 184,500 - GFF155 0.82 +0.1 184,500 - GFF155 0.82 -1.9 184,657 + +1.0 184,657 + -1.0 184,657 + -0.4 184,657 + -0.3 184,657 + -0.6 184,658 - -0.8 184,658 - +0.5 184,658 - -0.0 184,658 - +0.6 184,658 - +1.4 184,907 + GFF156 0.15 -0.9 184,908 - GFF156 0.15 +0.0 184,908 - GFF156 0.15 -1.6 185,083 + GFF156 0.40 +1.0 185,083 + GFF156 0.40 -0.7 185,084 - GFF156 0.41 -1.4 185,084 - GFF156 0.41 -0.4 185,746 - GFF157 0.41 +0.1 185,958 + GFF157 0.76 -0.2 185,958 + GFF157 0.76 -1.6 185,959 - GFF157 0.77 -1.0 185,971 - GFF157 0.79 +2.5 185,971 - GFF157 0.79 -1.2 186,021 + GFF157 0.87 -2.0 186,022 - GFF157 0.87 -0.2 186,042 + +0.3 186,043 - +1.0 186,043 - -0.1 186,063 + -0.1 186,063 + +1.0 186,063 + +0.3 186,063 + +0.2 186,064 - +0.5 186,064 - +0.4 186,064 - +0.1 186,078 + -0.4 186,078 + +0.4 186,116 + +1.4 186,116 + -0.0 186,117 - -1.2 186,117 - +1.0 186,117 - -1.4 186,117 - -0.2 186,847 + -0.0 186,848 - -1.0 186,848 - +1.0
Or see this region's nucleotide sequence