Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1567 and GFF1568 are separated by 30 nucleotides GFF1568 and GFF1569 are separated by 18 nucleotides GFF1569 and GFF1570 are separated by 38 nucleotides
GFF1567 - Demethylmenaquinone methyltransferase-like protein, at 167,721 to 168,446
GFF1567
GFF1568 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 168,477 to 169,262
GFF1568
GFF1569 - BUG/TctC family periplasmic protein, at 169,281 to 170,267
GFF1569
GFF1570 - Muconate cycloisomerase (EC 5.5.1.1), at 170,306 to 171,430
GFF1570
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 168.447 kb on - strand at 168.447 kb on - strand at 168.447 kb on - strand at 168.529 kb on + strand at 168.530 kb on - strand at 168.530 kb on - strand at 168.530 kb on - strand at 168.726 kb on + strand, within GFF1568 at 169.348 kb on + strand at 169.348 kb on + strand at 169.348 kb on + strand at 169.705 kb on + strand, within GFF1569 at 169.706 kb on - strand, within GFF1569 at 169.706 kb on - strand, within GFF1569 at 169.810 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.814 kb on + strand, within GFF1569 at 169.815 kb on - strand, within GFF1569 at 169.815 kb on - strand, within GFF1569 at 169.815 kb on - strand, within GFF1569 at 169.815 kb on - strand, within GFF1569 at 169.931 kb on - strand, within GFF1569 at 169.931 kb on - strand, within GFF1569 at 170.286 kb on + strand at 170.287 kb on - strand at 170.287 kb on - strand at 170.287 kb on - strand at 170.290 kb on + strand at 170.290 kb on + strand at 170.291 kb on - strand at 170.656 kb on - strand, within GFF1570 at 170.763 kb on + strand, within GFF1570 at 170.764 kb on - strand, within GFF1570 at 170.764 kb on - strand, within GFF1570 at 170.772 kb on + strand, within GFF1570 at 170.773 kb on - strand, within GFF1570 at 170.793 kb on + strand, within GFF1570 at 170.793 kb on + strand, within GFF1570 at 170.794 kb on - strand, within GFF1570 at 170.794 kb on - strand, within GFF1570 at 170.955 kb on + strand, within GFF1570 at 171.004 kb on - strand, within GFF1570 at 171.006 kb on + strand, within GFF1570 at 171.007 kb on - strand, within GFF1570 at 171.022 kb on - strand, within GFF1570 at 171.058 kb on - strand, within GFF1570 at 171.058 kb on - strand, within GFF1570 at 171.058 kb on - strand, within GFF1570 at 171.171 kb on + strand, within GFF1570 at 171.171 kb on + strand, within GFF1570 at 171.172 kb on - strand, within GFF1570 at 171.219 kb on - strand, within GFF1570
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 168,447 - -1.5 168,447 - -0.4 168,447 - -0.5 168,529 + +0.3 168,530 - -0.7 168,530 - +0.5 168,530 - -1.4 168,726 + GFF1568 0.32 -0.7 169,348 + -0.4 169,348 + -0.4 169,348 + +0.0 169,705 + GFF1569 0.43 +0.8 169,706 - GFF1569 0.43 -1.5 169,706 - GFF1569 0.43 +0.0 169,810 + GFF1569 0.54 +0.3 169,814 + GFF1569 0.54 +0.5 169,814 + GFF1569 0.54 +0.0 169,814 + GFF1569 0.54 -0.5 169,814 + GFF1569 0.54 +0.2 169,814 + GFF1569 0.54 +0.3 169,814 + GFF1569 0.54 -0.2 169,814 + GFF1569 0.54 -0.6 169,815 - GFF1569 0.54 +0.8 169,815 - GFF1569 0.54 +1.1 169,815 - GFF1569 0.54 +0.1 169,815 - GFF1569 0.54 +0.3 169,931 - GFF1569 0.66 -0.4 169,931 - GFF1569 0.66 +3.6 170,286 + -0.8 170,287 - +1.0 170,287 - -0.6 170,287 - +0.3 170,290 + +0.5 170,290 + +1.8 170,291 - -0.3 170,656 - GFF1570 0.31 -1.3 170,763 + GFF1570 0.41 +0.1 170,764 - GFF1570 0.41 +0.2 170,764 - GFF1570 0.41 +0.6 170,772 + GFF1570 0.41 -0.4 170,773 - GFF1570 0.42 +1.0 170,793 + GFF1570 0.43 -0.3 170,793 + GFF1570 0.43 -0.4 170,794 - GFF1570 0.43 -2.0 170,794 - GFF1570 0.43 -0.4 170,955 + GFF1570 0.58 -0.8 171,004 - GFF1570 0.62 -0.3 171,006 + GFF1570 0.62 +0.7 171,007 - GFF1570 0.62 -0.1 171,022 - GFF1570 0.64 -0.5 171,058 - GFF1570 0.67 -0.0 171,058 - GFF1570 0.67 +1.5 171,058 - GFF1570 0.67 -2.0 171,171 + GFF1570 0.77 -0.3 171,171 + GFF1570 0.77 +1.0 171,172 - GFF1570 0.77 -0.2 171,219 - GFF1570 0.81 +0.2
Or see this region's nucleotide sequence