Strain Fitness in Variovorax sp. SCN45 around GFF1454

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1453 and GFF1454 are separated by 200 nucleotidesGFF1454 and GFF1455 are separated by 561 nucleotides GFF1453 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 45,799 to 46,818 GFF1453 GFF1454 - Transcriptional regulator, LacI/PurR family, at 47,019 to 48,029 GFF1454 GFF1455 - DNA polymerase II (EC 2.7.7.7), at 48,591 to 48,953 GFF1455 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2 3at 46.205 kb on + strand, within GFF1453at 46.205 kb on + strand, within GFF1453at 46.205 kb on + strand, within GFF1453at 46.205 kb on + strand, within GFF1453at 46.206 kb on - strand, within GFF1453at 46.206 kb on - strand, within GFF1453at 46.206 kb on - strand, within GFF1453at 46.382 kb on + strand, within GFF1453at 46.382 kb on + strand, within GFF1453at 46.383 kb on - strand, within GFF1453at 46.383 kb on - strand, within GFF1453at 46.457 kb on + strand, within GFF1453at 46.457 kb on + strand, within GFF1453at 46.457 kb on + strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.458 kb on - strand, within GFF1453at 46.706 kb on + strand, within GFF1453at 46.706 kb on + strand, within GFF1453at 46.706 kb on + strand, within GFF1453at 46.707 kb on - strand, within GFF1453at 46.707 kb on - strand, within GFF1453at 46.707 kb on - strand, within GFF1453at 46.707 kb on - strand, within GFF1453at 46.712 kb on + strand, within GFF1453at 46.713 kb on - strand, within GFF1453at 46.713 kb on - strand, within GFF1453at 46.713 kb on - strand, within GFF1453at 46.953 kb on - strandat 46.962 kb on - strandat 47.142 kb on + strand, within GFF1454at 47.143 kb on - strand, within GFF1454at 47.163 kb on + strand, within GFF1454at 47.163 kb on + strand, within GFF1454at 47.163 kb on + strand, within GFF1454at 47.163 kb on + strand, within GFF1454at 47.164 kb on - strand, within GFF1454at 47.164 kb on - strand, within GFF1454at 47.257 kb on - strand, within GFF1454at 47.532 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.598 kb on + strand, within GFF1454at 47.599 kb on - strand, within GFF1454at 47.599 kb on - strand, within GFF1454at 47.710 kb on - strand, within GFF1454at 47.710 kb on - strand, within GFF1454at 47.710 kb on - strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.760 kb on + strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.761 kb on - strand, within GFF1454at 47.859 kb on - strand, within GFF1454at 48.038 kb on + strandat 48.038 kb on + strandat 48.039 kb on - strandat 48.039 kb on - strandat 48.092 kb on + strandat 48.093 kb on - strandat 48.093 kb on - strandat 48.093 kb on - strandat 48.093 kb on - strandat 48.093 kb on - strandat 48.192 kb on + strandat 48.192 kb on + strandat 48.193 kb on - strandat 48.193 kb on - strandat 48.264 kb on + strandat 48.268 kb on + strandat 48.311 kb on + strandat 48.311 kb on + strandat 48.312 kb on - strandat 48.338 kb on + strandat 48.346 kb on + strandat 48.347 kb on - strandat 48.347 kb on - strandat 48.392 kb on + strandat 48.392 kb on + strandat 48.392 kb on + strandat 48.392 kb on + strandat 48.393 kb on - strandat 48.393 kb on - strandat 48.393 kb on - strandat 48.404 kb on + strandat 48.405 kb on - strandat 48.405 kb on - strandat 48.405 kb on - strandat 48.405 kb on - strandat 48.412 kb on - strandat 48.412 kb on - strandat 48.412 kb on - strandat 48.412 kb on - strandat 48.485 kb on + strandat 48.485 kb on + strandat 48.486 kb on - strandat 48.486 kb on - strandat 48.518 kb on + strandat 48.518 kb on + strandat 48.519 kb on - strandat 48.519 kb on - strandat 48.519 kb on - strandat 48.534 kb on + strandat 48.535 kb on - strandat 48.535 kb on - strandat 48.628 kb on - strand, within GFF1455at 48.684 kb on + strand, within GFF1455at 48.685 kb on - strand, within GFF1455at 48.735 kb on + strand, within GFF1455at 48.736 kb on - strand, within GFF1455at 48.789 kb on + strand, within GFF1455at 48.789 kb on + strand, within GFF1455at 48.789 kb on + strand, within GFF1455at 48.789 kb on + strand, within GFF1455at 48.789 kb on + strand, within GFF1455at 48.789 kb on + strand, within GFF1455at 48.789 kb on + strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.790 kb on - strand, within GFF1455at 48.846 kb on + strand, within GFF1455at 48.846 kb on + strand, within GFF1455at 48.847 kb on - strand, within GFF1455at 48.855 kb on + strand, within GFF1455at 48.855 kb on + strand, within GFF1455at 48.856 kb on - strand, within GFF1455at 48.856 kb on - strand, within GFF1455at 48.856 kb on - strand, within GFF1455at 48.856 kb on - strand, within GFF1455at 48.856 kb on - strand, within GFF1455at 48.856 kb on - strand, within GFF1455at 48.856 kb on - strand, within GFF1455at 48.856 kb on - strand, within GFF1455at 48.951 kb on + strandat 48.952 kb on - strandat 48.977 kb on + strandat 48.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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46,205 + GFF1453 0.40 -0.2
46,205 + GFF1453 0.40 -0.2
46,205 + GFF1453 0.40 -0.7
46,205 + GFF1453 0.40 -1.2
46,206 - GFF1453 0.40 -0.2
46,206 - GFF1453 0.40 -0.2
46,206 - GFF1453 0.40 -1.4
46,382 + GFF1453 0.57 +1.5
46,382 + GFF1453 0.57 +1.0
46,383 - GFF1453 0.57 -1.0
46,383 - GFF1453 0.57 +0.3
46,457 + GFF1453 0.65 -1.7
46,457 + GFF1453 0.65 +0.2
46,457 + GFF1453 0.65 +0.2
46,458 - GFF1453 0.65 -1.9
46,458 - GFF1453 0.65 -0.1
46,458 - GFF1453 0.65 -0.7
46,458 - GFF1453 0.65 +0.4
46,458 - GFF1453 0.65 -0.8
46,706 + GFF1453 0.89 -0.3
46,706 + GFF1453 0.89 +0.6
46,706 + GFF1453 0.89 -0.0
46,707 - GFF1453 0.89 +0.1
46,707 - GFF1453 0.89 -1.0
46,707 - GFF1453 0.89 -0.2
46,707 - GFF1453 0.89 +0.1
46,712 + GFF1453 0.90 -0.3
46,713 - GFF1453 0.90 -0.4
46,713 - GFF1453 0.90 -0.2
46,713 - GFF1453 0.90 -0.3
46,953 - +0.9
46,962 - +1.8
47,142 + GFF1454 0.12 -0.4
47,143 - GFF1454 0.12 +0.2
47,163 + GFF1454 0.14 -0.7
47,163 + GFF1454 0.14 -0.9
47,163 + GFF1454 0.14 +1.8
47,163 + GFF1454 0.14 +0.1
47,164 - GFF1454 0.14 -0.4
47,164 - GFF1454 0.14 +1.8
47,257 - GFF1454 0.24 +0.1
47,532 + GFF1454 0.51 +1.1
47,598 + GFF1454 0.57 -0.3
47,598 + GFF1454 0.57 -0.6
47,598 + GFF1454 0.57 +0.7
47,598 + GFF1454 0.57 -0.2
47,598 + GFF1454 0.57 -0.7
47,598 + GFF1454 0.57 -0.4
47,599 - GFF1454 0.57 -0.3
47,599 - GFF1454 0.57 -0.8
47,710 - GFF1454 0.68 +0.1
47,710 - GFF1454 0.68 +0.5
47,710 - GFF1454 0.68 +0.3
47,760 + GFF1454 0.73 -0.2
47,760 + GFF1454 0.73 +0.2
47,760 + GFF1454 0.73 +0.6
47,760 + GFF1454 0.73 -0.1
47,760 + GFF1454 0.73 -0.4
47,760 + GFF1454 0.73 -0.2
47,761 - GFF1454 0.73 -0.2
47,761 - GFF1454 0.73 -0.5
47,761 - GFF1454 0.73 -1.1
47,761 - GFF1454 0.73 -0.0
47,761 - GFF1454 0.73 +0.2
47,761 - GFF1454 0.73 +0.2
47,761 - GFF1454 0.73 +0.5
47,859 - GFF1454 0.83 +3.6
48,038 + +0.1
48,038 + +0.2
48,039 - -0.2
48,039 - -0.3
48,092 + -0.9
48,093 - -0.7
48,093 - -0.4
48,093 - +1.3
48,093 - -1.0
48,093 - +0.6
48,192 + +0.9
48,192 + +0.0
48,193 - -0.4
48,193 - -0.1
48,264 + -1.1
48,268 + +0.0
48,311 + -0.0
48,311 + -0.1
48,312 - -0.1
48,338 + +0.6
48,346 + +0.5
48,347 - +0.2
48,347 - -0.2
48,392 + +0.4
48,392 + -0.4
48,392 + -0.5
48,392 + +0.0
48,393 - -0.9
48,393 - -1.3
48,393 - +1.2
48,404 + -1.4
48,405 - +1.5
48,405 - -0.9
48,405 - +0.1
48,405 - +0.8
48,412 - +0.5
48,412 - +1.6
48,412 - -0.0
48,412 - +0.0
48,485 + -0.6
48,485 + -0.2
48,486 - -0.0
48,486 - +1.5
48,518 + -0.7
48,518 + +0.2
48,519 - +0.2
48,519 - +0.9
48,519 - +1.8
48,534 + -0.2
48,535 - -0.5
48,535 - +0.2
48,628 - GFF1455 0.10 -1.9
48,684 + GFF1455 0.26 -0.8
48,685 - GFF1455 0.26 -0.4
48,735 + GFF1455 0.40 -0.5
48,736 - GFF1455 0.40 -1.0
48,789 + GFF1455 0.55 +0.6
48,789 + GFF1455 0.55 -0.4
48,789 + GFF1455 0.55 +0.2
48,789 + GFF1455 0.55 -1.0
48,789 + GFF1455 0.55 -0.4
48,789 + GFF1455 0.55 -1.2
48,789 + GFF1455 0.55 -0.2
48,790 - GFF1455 0.55 +1.2
48,790 - GFF1455 0.55 -0.1
48,790 - GFF1455 0.55 -0.3
48,790 - GFF1455 0.55 +2.8
48,790 - GFF1455 0.55 +0.6
48,790 - GFF1455 0.55 +0.6
48,790 - GFF1455 0.55 -0.3
48,790 - GFF1455 0.55 -0.4
48,790 - GFF1455 0.55 +0.6
48,790 - GFF1455 0.55 +0.3
48,790 - GFF1455 0.55 -1.7
48,790 - GFF1455 0.55 -0.0
48,790 - GFF1455 0.55 -0.8
48,790 - GFF1455 0.55 +0.1
48,790 - GFF1455 0.55 -0.2
48,790 - GFF1455 0.55 -0.1
48,846 + GFF1455 0.70 +0.5
48,846 + GFF1455 0.70 -0.4
48,847 - GFF1455 0.71 +0.8
48,855 + GFF1455 0.73 -0.1
48,855 + GFF1455 0.73 +0.8
48,856 - GFF1455 0.73 +0.5
48,856 - GFF1455 0.73 -0.4
48,856 - GFF1455 0.73 +0.0
48,856 - GFF1455 0.73 +0.8
48,856 - GFF1455 0.73 +1.3
48,856 - GFF1455 0.73 +0.8
48,856 - GFF1455 0.73 -1.2
48,856 - GFF1455 0.73 +0.4
48,951 + +0.2
48,952 - +0.2
48,977 + -0.0
48,977 + +0.2

Or see this region's nucleotide sequence