Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1448 and GFF1449 are separated by 12 nucleotides GFF1449 and GFF1450 overlap by 4 nucleotides
GFF1448 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 37,544 to 40,723
GFF1448
GFF1449 - Predicted pyridoxine biosynthesis protein (probably from glycolaldehide), at 40,736 to 42,049
GFF1449
GFF1450 - similar to ribulose-1,5-bisphosphate carboxylase, Type III, at 42,046 to 43,314
GFF1450
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -1
0
1 at 39.863 kb on + strand, within GFF1448 at 39.864 kb on - strand, within GFF1448 at 39.864 kb on - strand, within GFF1448 at 39.864 kb on - strand, within GFF1448 at 40.437 kb on - strand at 40.549 kb on + strand at 40.640 kb on + strand at 40.640 kb on + strand at 40.722 kb on - strand at 40.722 kb on - strand at 40.879 kb on - strand, within GFF1449 at 41.219 kb on + strand, within GFF1449 at 41.220 kb on - strand, within GFF1449 at 41.662 kb on - strand, within GFF1449 at 41.790 kb on + strand, within GFF1449 at 41.790 kb on + strand, within GFF1449 at 41.790 kb on + strand, within GFF1449 at 41.791 kb on - strand, within GFF1449 at 41.791 kb on - strand, within GFF1449 at 42.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 39,863 + GFF1448 0.73 +1.4 39,864 - GFF1448 0.73 +0.1 39,864 - GFF1448 0.73 -0.4 39,864 - GFF1448 0.73 -0.6 40,437 - +0.5 40,549 + -0.4 40,640 + -0.8 40,640 + -0.9 40,722 - -1.0 40,722 - -0.4 40,879 - GFF1449 0.11 -0.3 41,219 + GFF1449 0.37 +0.8 41,220 - GFF1449 0.37 +0.2 41,662 - GFF1449 0.70 +0.8 41,790 + GFF1449 0.80 -0.8 41,790 + GFF1449 0.80 +1.5 41,790 + GFF1449 0.80 +0.6 41,791 - GFF1449 0.80 -0.3 41,791 - GFF1449 0.80 +1.1 42,024 + -0.8
Or see this region's nucleotide sequence