Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1382 and GFF1383 are separated by 31 nucleotides GFF1383 and GFF1384 are separated by 3 nucleotides
GFF1382 - Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein, at 728,334 to 729,131
GFF1382
GFF1383 - Hypothetical protein in cluster with At3g50560-like gene family, at 729,163 to 730,023
GFF1383
GFF1384 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 730,027 to 731,358
GFF1384
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2 at 728.173 kb on + strand at 728.174 kb on - strand at 728.272 kb on - strand at 728.272 kb on - strand at 728.290 kb on + strand at 728.291 kb on - strand at 728.314 kb on + strand at 728.314 kb on + strand at 728.314 kb on + strand at 728.315 kb on - strand at 728.315 kb on - strand at 728.315 kb on - strand at 728.316 kb on + strand at 728.316 kb on + strand at 728.316 kb on + strand at 728.317 kb on - strand at 728.317 kb on - strand at 729.230 kb on - strand at 729.230 kb on - strand at 729.230 kb on - strand at 729.262 kb on + strand, within GFF1383 at 729.262 kb on + strand, within GFF1383 at 729.263 kb on - strand, within GFF1383 at 729.263 kb on - strand, within GFF1383 at 729.263 kb on - strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.451 kb on + strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.452 kb on - strand, within GFF1383 at 729.455 kb on - strand, within GFF1383 at 729.455 kb on - strand, within GFF1383 at 729.455 kb on - strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.808 kb on + strand, within GFF1383 at 729.809 kb on - strand, within GFF1383 at 729.809 kb on - strand, within GFF1383 at 729.809 kb on - strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.820 kb on + strand, within GFF1383 at 729.821 kb on - strand, within GFF1383 at 729.821 kb on - strand, within GFF1383 at 729.821 kb on - strand, within GFF1383 at 729.889 kb on + strand, within GFF1383 at 729.889 kb on + strand, within GFF1383 at 729.890 kb on - strand, within GFF1383 at 729.919 kb on + strand, within GFF1383 at 729.919 kb on + strand, within GFF1383 at 730.300 kb on - strand, within GFF1384 at 730.300 kb on - strand, within GFF1384 at 730.300 kb on - strand, within GFF1384 at 730.486 kb on + strand, within GFF1384 at 730.486 kb on + strand, within GFF1384 at 730.486 kb on + strand, within GFF1384 at 730.487 kb on - strand, within GFF1384 at 730.507 kb on + strand, within GFF1384 at 730.508 kb on - strand, within GFF1384 at 730.650 kb on + strand, within GFF1384 at 730.651 kb on - strand, within GFF1384 at 730.783 kb on + strand, within GFF1384 at 730.924 kb on + strand, within GFF1384 at 730.925 kb on - strand, within GFF1384
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 728,173 + +0.3 728,174 - +0.7 728,272 - +0.9 728,272 - -0.0 728,290 + -0.8 728,291 - -0.0 728,314 + +0.8 728,314 + -0.4 728,314 + -0.2 728,315 - +0.8 728,315 - -0.5 728,315 - +2.4 728,316 + -0.3 728,316 + -0.5 728,316 + -0.4 728,317 - -0.6 728,317 - -0.2 729,230 - -2.1 729,230 - -1.2 729,230 - -0.7 729,262 + GFF1383 0.11 -0.3 729,262 + GFF1383 0.11 -0.8 729,263 - GFF1383 0.12 +1.4 729,263 - GFF1383 0.12 -0.3 729,263 - GFF1383 0.12 -1.2 729,451 + GFF1383 0.33 -1.0 729,451 + GFF1383 0.33 +0.4 729,451 + GFF1383 0.33 -0.0 729,451 + GFF1383 0.33 -0.2 729,451 + GFF1383 0.33 -0.5 729,451 + GFF1383 0.33 -0.6 729,451 + GFF1383 0.33 +0.3 729,452 - GFF1383 0.34 -0.4 729,452 - GFF1383 0.34 -1.3 729,452 - GFF1383 0.34 +0.5 729,452 - GFF1383 0.34 -1.5 729,452 - GFF1383 0.34 -0.7 729,455 - GFF1383 0.34 -0.1 729,455 - GFF1383 0.34 +0.4 729,455 - GFF1383 0.34 -0.5 729,808 + GFF1383 0.75 -0.4 729,808 + GFF1383 0.75 +1.0 729,808 + GFF1383 0.75 -0.0 729,808 + GFF1383 0.75 +0.0 729,808 + GFF1383 0.75 -0.2 729,808 + GFF1383 0.75 -1.5 729,809 - GFF1383 0.75 -0.2 729,809 - GFF1383 0.75 -0.5 729,809 - GFF1383 0.75 -0.9 729,820 + GFF1383 0.76 -0.6 729,820 + GFF1383 0.76 -0.7 729,820 + GFF1383 0.76 +0.1 729,820 + GFF1383 0.76 +1.2 729,820 + GFF1383 0.76 -0.5 729,821 - GFF1383 0.76 +0.0 729,821 - GFF1383 0.76 -0.4 729,821 - GFF1383 0.76 +0.1 729,889 + GFF1383 0.84 -0.7 729,889 + GFF1383 0.84 -2.4 729,890 - GFF1383 0.84 -0.5 729,919 + GFF1383 0.88 -0.1 729,919 + GFF1383 0.88 -0.5 730,300 - GFF1384 0.20 +0.1 730,300 - GFF1384 0.20 +0.2 730,300 - GFF1384 0.20 +0.8 730,486 + GFF1384 0.34 +1.0 730,486 + GFF1384 0.34 +0.5 730,486 + GFF1384 0.34 -0.1 730,487 - GFF1384 0.35 -0.9 730,507 + GFF1384 0.36 -0.4 730,508 - GFF1384 0.36 -0.5 730,650 + GFF1384 0.47 +0.6 730,651 - GFF1384 0.47 -1.6 730,783 + GFF1384 0.57 -0.5 730,924 + GFF1384 0.67 -0.7 730,925 - GFF1384 0.67 +0.5
Or see this region's nucleotide sequence