Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1377 and GFF1378 are separated by 31 nucleotides GFF1378 and GFF1379 are separated by 82 nucleotides GFF1379 and GFF1380 are separated by 52 nucleotides GFF1380 and GFF1381 overlap by 19 nucleotides
GFF1377 - Phosphohydrolase (MutT/nudix family protein), at 723,835 to 724,458
GFF1377
GFF1378 - no description, at 724,490 to 724,816
GFF1378
GFF1379 - Uncharacterized MFS-type transporter, at 724,899 to 726,197
GFF1379
GFF1380 - Peptidase M48, Ste24p, at 726,250 to 727,176
GFF1380
GFF1381 - Peptidase M48, Ste24p, at 727,158 to 728,135
GFF1381
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -1
0
1
2 at 723.928 kb on + strand, within GFF1377 at 723.928 kb on + strand, within GFF1377 at 723.928 kb on + strand, within GFF1377 at 723.929 kb on - strand, within GFF1377 at 724.332 kb on - strand, within GFF1377 at 724.414 kb on + strand at 724.415 kb on - strand at 724.415 kb on - strand at 724.453 kb on + strand at 724.454 kb on - strand at 724.579 kb on + strand, within GFF1378 at 724.580 kb on - strand, within GFF1378 at 724.794 kb on + strand at 724.794 kb on + strand at 724.795 kb on - strand at 724.828 kb on - strand at 724.993 kb on + strand at 725.006 kb on - strand at 725.059 kb on + strand, within GFF1379 at 725.060 kb on - strand, within GFF1379 at 725.060 kb on - strand, within GFF1379 at 725.428 kb on + strand, within GFF1379 at 725.452 kb on + strand, within GFF1379 at 725.614 kb on + strand, within GFF1379 at 725.614 kb on + strand, within GFF1379 at 725.614 kb on + strand, within GFF1379 at 725.614 kb on + strand, within GFF1379 at 725.614 kb on + strand, within GFF1379 at 725.615 kb on - strand, within GFF1379 at 725.615 kb on - strand, within GFF1379 at 725.717 kb on - strand, within GFF1379 at 725.717 kb on - strand, within GFF1379 at 725.717 kb on - strand, within GFF1379 at 725.818 kb on + strand, within GFF1379 at 725.818 kb on + strand, within GFF1379 at 725.819 kb on - strand, within GFF1379 at 725.819 kb on - strand, within GFF1379 at 726.010 kb on + strand, within GFF1379 at 726.010 kb on + strand, within GFF1379 at 726.011 kb on - strand, within GFF1379 at 726.011 kb on - strand, within GFF1379 at 726.127 kb on + strand at 726.127 kb on + strand at 726.127 kb on + strand at 726.128 kb on - strand at 726.251 kb on + strand at 726.252 kb on - strand at 726.333 kb on - strand at 726.333 kb on - strand at 726.471 kb on - strand, within GFF1380 at 726.471 kb on - strand, within GFF1380 at 726.636 kb on - strand, within GFF1380 at 726.683 kb on + strand, within GFF1380 at 726.684 kb on - strand, within GFF1380 at 726.839 kb on + strand, within GFF1380 at 726.839 kb on + strand, within GFF1380 at 726.840 kb on - strand, within GFF1380 at 726.992 kb on + strand, within GFF1380 at 727.128 kb on - strand at 727.187 kb on + strand at 727.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 723,928 + GFF1377 0.15 +0.3 723,928 + GFF1377 0.15 -0.2 723,928 + GFF1377 0.15 +1.0 723,929 - GFF1377 0.15 -0.9 724,332 - GFF1377 0.80 -0.0 724,414 + -0.1 724,415 - -1.0 724,415 - +0.0 724,453 + -0.4 724,454 - -0.5 724,579 + GFF1378 0.27 -0.4 724,580 - GFF1378 0.28 -0.2 724,794 + +0.6 724,794 + +1.8 724,795 - -0.9 724,828 - -0.4 724,993 + +0.5 725,006 - +0.0 725,059 + GFF1379 0.12 +1.1 725,060 - GFF1379 0.12 -0.3 725,060 - GFF1379 0.12 -0.2 725,428 + GFF1379 0.41 +0.8 725,452 + GFF1379 0.43 -0.3 725,614 + GFF1379 0.55 -0.2 725,614 + GFF1379 0.55 -1.1 725,614 + GFF1379 0.55 -0.9 725,614 + GFF1379 0.55 -0.9 725,614 + GFF1379 0.55 -0.7 725,615 - GFF1379 0.55 -0.2 725,615 - GFF1379 0.55 -0.7 725,717 - GFF1379 0.63 +0.1 725,717 - GFF1379 0.63 -0.2 725,717 - GFF1379 0.63 -0.7 725,818 + GFF1379 0.71 +0.3 725,818 + GFF1379 0.71 -1.3 725,819 - GFF1379 0.71 +1.3 725,819 - GFF1379 0.71 +0.4 726,010 + GFF1379 0.86 -0.1 726,010 + GFF1379 0.86 +0.3 726,011 - GFF1379 0.86 -0.8 726,011 - GFF1379 0.86 +0.4 726,127 + -0.4 726,127 + +1.1 726,127 + -0.1 726,128 - +0.3 726,251 + +0.3 726,252 - -0.1 726,333 - -0.2 726,333 - -0.3 726,471 - GFF1380 0.24 +0.4 726,471 - GFF1380 0.24 -0.3 726,636 - GFF1380 0.42 -0.2 726,683 + GFF1380 0.47 +0.0 726,684 - GFF1380 0.47 +0.3 726,839 + GFF1380 0.64 -0.2 726,839 + GFF1380 0.64 -0.3 726,840 - GFF1380 0.64 -0.6 726,992 + GFF1380 0.80 -0.2 727,128 - +0.0 727,187 + +0.0 727,188 - -0.2
Or see this region's nucleotide sequence