Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1371 and GFF1372 are separated by 40 nucleotides GFF1372 and GFF1373 are separated by 2 nucleotides GFF1373 and GFF1374 are separated by 9 nucleotides
GFF1371 - Fe-S protein, homolog of lactate dehydrogenase SO1521, at 715,405 to 718,482
GFF1371
GFF1372 - Uncharacterized MFS-type transporter, at 718,523 to 719,773
GFF1372
GFF1373 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 719,776 to 720,312
GFF1373
GFF1374 - hypothetical protein, at 720,322 to 721,572
GFF1374
Position (kb) 718
719
720 Strain fitness (log2 ratio) -2
-1
0
1
2 at 717.820 kb on + strand, within GFF1371 at 717.821 kb on - strand, within GFF1371 at 717.931 kb on - strand, within GFF1371 at 718.391 kb on + strand at 718.391 kb on + strand at 718.392 kb on - strand at 718.392 kb on - strand at 718.392 kb on - strand at 718.431 kb on - strand at 718.700 kb on + strand, within GFF1372 at 718.700 kb on + strand, within GFF1372 at 718.701 kb on - strand, within GFF1372 at 718.701 kb on - strand, within GFF1372 at 718.701 kb on - strand, within GFF1372 at 718.743 kb on - strand, within GFF1372 at 718.991 kb on + strand, within GFF1372 at 718.991 kb on + strand, within GFF1372 at 718.991 kb on + strand, within GFF1372 at 718.992 kb on - strand, within GFF1372 at 718.992 kb on - strand, within GFF1372 at 718.992 kb on - strand, within GFF1372 at 718.992 kb on - strand, within GFF1372 at 718.992 kb on - strand, within GFF1372 at 719.200 kb on + strand, within GFF1372 at 719.200 kb on + strand, within GFF1372 at 719.200 kb on + strand, within GFF1372 at 719.200 kb on + strand, within GFF1372 at 719.253 kb on - strand, within GFF1372 at 719.273 kb on + strand, within GFF1372 at 719.273 kb on + strand, within GFF1372 at 719.273 kb on + strand, within GFF1372 at 719.273 kb on + strand, within GFF1372 at 719.273 kb on + strand, within GFF1372 at 719.273 kb on + strand, within GFF1372 at 719.274 kb on - strand, within GFF1372 at 719.282 kb on + strand, within GFF1372 at 719.282 kb on + strand, within GFF1372 at 719.282 kb on + strand, within GFF1372 at 719.283 kb on - strand, within GFF1372 at 719.283 kb on - strand, within GFF1372 at 719.283 kb on - strand, within GFF1372 at 719.283 kb on - strand, within GFF1372 at 719.348 kb on + strand, within GFF1372 at 719.348 kb on + strand, within GFF1372 at 719.348 kb on + strand, within GFF1372 at 719.348 kb on + strand, within GFF1372 at 720.052 kb on + strand, within GFF1373 at 720.052 kb on + strand, within GFF1373 at 720.052 kb on + strand, within GFF1373 at 720.052 kb on + strand, within GFF1373 at 720.053 kb on - strand, within GFF1373 at 720.094 kb on + strand, within GFF1373 at 720.094 kb on + strand, within GFF1373 at 720.311 kb on - strand at 720.514 kb on + strand, within GFF1374 at 720.767 kb on + strand, within GFF1374
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 717,820 + GFF1371 0.78 +0.2 717,821 - GFF1371 0.78 -0.2 717,931 - GFF1371 0.82 -0.3 718,391 + -0.4 718,391 + -1.3 718,392 - +0.7 718,392 - +0.7 718,392 - +0.3 718,431 - +0.4 718,700 + GFF1372 0.14 +0.1 718,700 + GFF1372 0.14 -0.3 718,701 - GFF1372 0.14 +0.3 718,701 - GFF1372 0.14 +0.3 718,701 - GFF1372 0.14 -0.6 718,743 - GFF1372 0.18 +0.4 718,991 + GFF1372 0.37 +0.0 718,991 + GFF1372 0.37 -0.3 718,991 + GFF1372 0.37 +1.8 718,992 - GFF1372 0.37 -0.6 718,992 - GFF1372 0.37 +0.5 718,992 - GFF1372 0.37 -0.1 718,992 - GFF1372 0.37 -0.1 718,992 - GFF1372 0.37 -2.4 719,200 + GFF1372 0.54 +0.2 719,200 + GFF1372 0.54 -2.7 719,200 + GFF1372 0.54 -0.2 719,200 + GFF1372 0.54 -2.1 719,253 - GFF1372 0.58 -0.6 719,273 + GFF1372 0.60 +0.4 719,273 + GFF1372 0.60 +0.3 719,273 + GFF1372 0.60 -0.6 719,273 + GFF1372 0.60 -0.2 719,273 + GFF1372 0.60 +0.4 719,273 + GFF1372 0.60 +0.4 719,274 - GFF1372 0.60 +1.0 719,282 + GFF1372 0.61 -0.1 719,282 + GFF1372 0.61 -0.0 719,282 + GFF1372 0.61 -0.2 719,283 - GFF1372 0.61 -2.0 719,283 - GFF1372 0.61 +0.7 719,283 - GFF1372 0.61 +0.2 719,283 - GFF1372 0.61 +0.3 719,348 + GFF1372 0.66 -0.8 719,348 + GFF1372 0.66 +2.1 719,348 + GFF1372 0.66 -0.0 719,348 + GFF1372 0.66 +0.3 720,052 + GFF1373 0.51 -0.6 720,052 + GFF1373 0.51 -0.5 720,052 + GFF1373 0.51 -0.9 720,052 + GFF1373 0.51 -1.2 720,053 - GFF1373 0.52 +0.1 720,094 + GFF1373 0.59 -0.8 720,094 + GFF1373 0.59 -0.2 720,311 - -0.3 720,514 + GFF1374 0.15 -1.3 720,767 + GFF1374 0.36 -0.4
Or see this region's nucleotide sequence