Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1285 and GFF1286 are separated by 21 nucleotides GFF1286 and GFF1287 overlap by 4 nucleotides GFF1287 and GFF1288 are separated by 0 nucleotides GFF1288 and GFF1289 are separated by 1 nucleotides
GFF1285 - Alkyl hydroperoxide reductase subunit C-like protein, at 613,058 to 613,699
GFF1285
GFF1286 - FIG00932541: hypothetical protein, at 613,721 to 614,296
GFF1286
GFF1287 - Sulfate and thiosulfate binding protein CysP, at 614,293 to 615,309
GFF1287
GFF1288 - Sulfate transport system permease protein CysT, at 615,310 to 616,197
GFF1288
GFF1289 - Sulfate transport system permease protein CysW, at 616,199 to 617,101
GFF1289
Position (kb) 614
615
616 Strain fitness (log2 ratio) -2
-1
0
1
2 at 613.382 kb on + strand, within GFF1285 at 613.382 kb on + strand, within GFF1285 at 613.382 kb on + strand, within GFF1285 at 613.382 kb on + strand, within GFF1285 at 613.382 kb on + strand, within GFF1285 at 613.383 kb on - strand, within GFF1285 at 613.383 kb on - strand, within GFF1285 at 613.383 kb on - strand, within GFF1285 at 613.383 kb on - strand, within GFF1285 at 613.433 kb on + strand, within GFF1285 at 613.433 kb on + strand, within GFF1285 at 613.433 kb on + strand, within GFF1285 at 613.434 kb on - strand, within GFF1285 at 613.434 kb on - strand, within GFF1285 at 613.434 kb on - strand, within GFF1285 at 613.475 kb on + strand, within GFF1285 at 613.476 kb on - strand, within GFF1285 at 613.476 kb on - strand, within GFF1285 at 613.667 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 614.123 kb on + strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.398 kb on + strand, within GFF1287 at 614.398 kb on + strand, within GFF1287 at 614.398 kb on + strand, within GFF1287 at 614.398 kb on + strand, within GFF1287 at 614.420 kb on - strand, within GFF1287 at 614.428 kb on + strand, within GFF1287 at 614.428 kb on + strand, within GFF1287 at 614.429 kb on - strand, within GFF1287 at 614.429 kb on - strand, within GFF1287 at 614.429 kb on - strand, within GFF1287 at 614.452 kb on + strand, within GFF1287 at 614.452 kb on + strand, within GFF1287 at 614.453 kb on - strand, within GFF1287 at 614.453 kb on - strand, within GFF1287 at 614.453 kb on - strand, within GFF1287 at 614.773 kb on + strand, within GFF1287 at 614.773 kb on + strand, within GFF1287 at 614.774 kb on - strand, within GFF1287 at 614.779 kb on + strand, within GFF1287 at 614.780 kb on - strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.865 kb on - strand, within GFF1287 at 614.865 kb on - strand, within GFF1287 at 614.961 kb on + strand, within GFF1287 at 614.961 kb on + strand, within GFF1287 at 614.962 kb on - strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.092 kb on - strand, within GFF1287 at 615.092 kb on - strand, within GFF1287 at 615.092 kb on - strand, within GFF1287 at 615.106 kb on + strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.178 kb on + strand, within GFF1287 at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.291 kb on + strand at 615.291 kb on + strand at 615.307 kb on + strand at 615.307 kb on + strand at 615.433 kb on + strand, within GFF1288 at 615.545 kb on - strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 616.000 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.085 kb on - strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.091 kb on - strand, within GFF1288
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 613,382 + GFF1285 0.50 -2.2 613,382 + GFF1285 0.50 -0.5 613,382 + GFF1285 0.50 -0.1 613,382 + GFF1285 0.50 -0.7 613,382 + GFF1285 0.50 -0.7 613,383 - GFF1285 0.51 -1.3 613,383 - GFF1285 0.51 -0.2 613,383 - GFF1285 0.51 -0.5 613,383 - GFF1285 0.51 +1.3 613,433 + GFF1285 0.58 +0.2 613,433 + GFF1285 0.58 +0.5 613,433 + GFF1285 0.58 -0.1 613,434 - GFF1285 0.59 -0.5 613,434 - GFF1285 0.59 -0.4 613,434 - GFF1285 0.59 +1.0 613,475 + GFF1285 0.65 -0.6 613,476 - GFF1285 0.65 +0.3 613,476 - GFF1285 0.65 -0.7 613,667 + -0.7 613,697 + -0.5 613,697 + -0.2 613,697 + +0.2 613,697 + -1.2 613,697 + -0.5 613,697 + -1.5 613,698 - +0.1 613,698 - -0.6 613,698 - +0.3 613,698 - +0.5 613,698 - +0.6 613,698 - -0.2 613,698 - -0.5 613,698 - -0.0 613,698 - -0.5 613,698 - +0.4 613,698 - -0.3 614,123 + GFF1286 0.70 +0.3 614,124 - GFF1286 0.70 +0.3 614,124 - GFF1286 0.70 -0.3 614,124 - GFF1286 0.70 -0.3 614,124 - GFF1286 0.70 +0.2 614,124 - GFF1286 0.70 +0.8 614,124 - GFF1286 0.70 +0.4 614,124 - GFF1286 0.70 +0.4 614,124 - GFF1286 0.70 -0.1 614,398 + GFF1287 0.10 -0.0 614,398 + GFF1287 0.10 -0.0 614,398 + GFF1287 0.10 -0.2 614,398 + GFF1287 0.10 -1.0 614,420 - GFF1287 0.12 +1.5 614,428 + GFF1287 0.13 -0.9 614,428 + GFF1287 0.13 -1.3 614,429 - GFF1287 0.13 -0.3 614,429 - GFF1287 0.13 -1.3 614,429 - GFF1287 0.13 -0.5 614,452 + GFF1287 0.16 -1.3 614,452 + GFF1287 0.16 -0.8 614,453 - GFF1287 0.16 -1.3 614,453 - GFF1287 0.16 -0.2 614,453 - GFF1287 0.16 -0.3 614,773 + GFF1287 0.47 -0.7 614,773 + GFF1287 0.47 -0.2 614,774 - GFF1287 0.47 -1.3 614,779 + GFF1287 0.48 -0.5 614,780 - GFF1287 0.48 +0.8 614,797 + GFF1287 0.50 -1.5 614,797 + GFF1287 0.50 +0.3 614,797 + GFF1287 0.50 -0.0 614,797 + GFF1287 0.50 -0.2 614,797 + GFF1287 0.50 +0.8 614,797 + GFF1287 0.50 -0.6 614,797 + GFF1287 0.50 -0.6 614,797 + GFF1287 0.50 -0.9 614,798 - GFF1287 0.50 -0.7 614,798 - GFF1287 0.50 +0.0 614,798 - GFF1287 0.50 -0.7 614,798 - GFF1287 0.50 +0.3 614,865 - GFF1287 0.56 -1.3 614,865 - GFF1287 0.56 -0.5 614,961 + GFF1287 0.66 -0.7 614,961 + GFF1287 0.66 +0.8 614,962 - GFF1287 0.66 -1.2 615,091 + GFF1287 0.78 +0.8 615,091 + GFF1287 0.78 +0.4 615,091 + GFF1287 0.78 +0.6 615,091 + GFF1287 0.78 -0.2 615,092 - GFF1287 0.79 -0.5 615,092 - GFF1287 0.79 -0.7 615,092 - GFF1287 0.79 -0.3 615,106 + GFF1287 0.80 +2.2 615,107 - GFF1287 0.80 -0.9 615,107 - GFF1287 0.80 -1.2 615,107 - GFF1287 0.80 -0.7 615,107 - GFF1287 0.80 -0.5 615,107 - GFF1287 0.80 -0.6 615,178 + GFF1287 0.87 +0.1 615,289 + +0.3 615,289 + -1.7 615,289 + +0.1 615,289 + +0.7 615,290 - +1.0 615,290 - +0.2 615,290 - -1.3 615,290 - -0.7 615,290 - -0.9 615,291 + -0.1 615,291 + +0.3 615,307 + -2.0 615,307 + -0.4 615,433 + GFF1288 0.14 +0.1 615,545 - GFF1288 0.26 -1.1 615,628 + GFF1288 0.36 -0.3 615,628 + GFF1288 0.36 +1.3 615,629 - GFF1288 0.36 -1.4 615,629 - GFF1288 0.36 -1.0 616,000 + GFF1288 0.78 +0.8 616,084 + GFF1288 0.87 +0.2 616,084 + GFF1288 0.87 -0.7 616,085 - GFF1288 0.87 -0.5 616,090 + GFF1288 0.88 +0.0 616,090 + GFF1288 0.88 +0.0 616,091 - GFF1288 0.88 +0.8
Or see this region's nucleotide sequence