Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1228 and GFF1229 are separated by 65 nucleotides GFF1229 and GFF1230 are separated by 34 nucleotides
GFF1228 - Fructose-bisphosphate aldolase class I (EC 4.1.2.13), at 547,987 to 549,051
GFF1228
GFF1229 - 4-hydroxybutyrate coenzyme A transferase, at 549,117 to 550,415
GFF1229
GFF1230 - Malic enzyme, at 550,450 to 551,670
GFF1230
Position (kb) 549
550
551 Strain fitness (log2 ratio) -2
-1
0
1 at 548.589 kb on - strand, within GFF1228 at 548.591 kb on + strand, within GFF1228 at 548.592 kb on - strand, within GFF1228 at 548.592 kb on - strand, within GFF1228 at 549.136 kb on - strand at 549.309 kb on + strand, within GFF1229 at 549.309 kb on + strand, within GFF1229 at 549.309 kb on + strand, within GFF1229 at 549.309 kb on + strand, within GFF1229 at 549.315 kb on + strand, within GFF1229 at 549.315 kb on + strand, within GFF1229 at 549.315 kb on + strand, within GFF1229 at 549.315 kb on + strand, within GFF1229 at 549.316 kb on - strand, within GFF1229 at 549.316 kb on - strand, within GFF1229 at 549.420 kb on + strand, within GFF1229 at 549.420 kb on + strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.421 kb on - strand, within GFF1229 at 549.510 kb on + strand, within GFF1229 at 549.511 kb on - strand, within GFF1229 at 549.537 kb on + strand, within GFF1229 at 549.537 kb on + strand, within GFF1229 at 549.538 kb on - strand, within GFF1229 at 549.538 kb on - strand, within GFF1229 at 549.538 kb on - strand, within GFF1229 at 549.607 kb on - strand, within GFF1229 at 549.897 kb on + strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.948 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.279 kb on - strand, within GFF1229 at 550.279 kb on - strand, within GFF1229 at 550.279 kb on - strand, within GFF1229 at 550.279 kb on - strand, within GFF1229 at 550.932 kb on + strand, within GFF1230 at 550.933 kb on - strand, within GFF1230 at 550.933 kb on - strand, within GFF1230 at 550.933 kb on - strand, within GFF1230 at 550.933 kb on - strand, within GFF1230
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 548,589 - GFF1228 0.57 -0.5 548,591 + GFF1228 0.57 +0.5 548,592 - GFF1228 0.57 -1.0 548,592 - GFF1228 0.57 -1.7 549,136 - +0.7 549,309 + GFF1229 0.15 +0.3 549,309 + GFF1229 0.15 -1.9 549,309 + GFF1229 0.15 +0.0 549,309 + GFF1229 0.15 -0.4 549,315 + GFF1229 0.15 -0.8 549,315 + GFF1229 0.15 +0.6 549,315 + GFF1229 0.15 -1.2 549,315 + GFF1229 0.15 -0.3 549,316 - GFF1229 0.15 +0.0 549,316 - GFF1229 0.15 -0.5 549,420 + GFF1229 0.23 -0.2 549,420 + GFF1229 0.23 +0.6 549,421 - GFF1229 0.23 -0.3 549,421 - GFF1229 0.23 -0.2 549,421 - GFF1229 0.23 -0.2 549,421 - GFF1229 0.23 +0.2 549,421 - GFF1229 0.23 +0.4 549,421 - GFF1229 0.23 +0.4 549,421 - GFF1229 0.23 +0.7 549,510 + GFF1229 0.30 -0.5 549,511 - GFF1229 0.30 +0.5 549,537 + GFF1229 0.32 -0.2 549,537 + GFF1229 0.32 +0.1 549,538 - GFF1229 0.32 -0.4 549,538 - GFF1229 0.32 -0.1 549,538 - GFF1229 0.32 +0.6 549,607 - GFF1229 0.38 +0.3 549,897 + GFF1229 0.60 -0.5 549,898 - GFF1229 0.60 -0.5 549,898 - GFF1229 0.60 +0.1 549,898 - GFF1229 0.60 -0.2 549,898 - GFF1229 0.60 +0.6 549,898 - GFF1229 0.60 -1.0 549,948 + GFF1229 0.64 +0.5 550,278 + GFF1229 0.89 -1.1 550,278 + GFF1229 0.89 -0.6 550,278 + GFF1229 0.89 +0.0 550,278 + GFF1229 0.89 +0.8 550,278 + GFF1229 0.89 +0.2 550,278 + GFF1229 0.89 +0.3 550,278 + GFF1229 0.89 -0.8 550,279 - GFF1229 0.89 +0.0 550,279 - GFF1229 0.89 +0.1 550,279 - GFF1229 0.89 +0.3 550,279 - GFF1229 0.89 +0.4 550,932 + GFF1230 0.39 +0.6 550,933 - GFF1230 0.40 -0.2 550,933 - GFF1230 0.40 -1.5 550,933 - GFF1230 0.40 +0.7 550,933 - GFF1230 0.40 -0.9
Or see this region's nucleotide sequence