Strain Fitness in Variovorax sp. SCN45 around GFF1226

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1225 and GFF1226 are separated by 10 nucleotidesGFF1226 and GFF1227 are separated by 34 nucleotidesGFF1227 and GFF1228 are separated by 146 nucleotides GFF1225 - Glycine/D-amino acid oxidases (deaminating), at 544,734 to 545,906 GFF1225 GFF1226 - Heavy-chain fibroin (Fragment), at 545,917 to 547,248 GFF1226 GFF1227 - no description, at 547,283 to 547,840 GFF1227 GFF1228 - Fructose-bisphosphate aldolase class I (EC 4.1.2.13), at 547,987 to 549,051 GFF1228 Position (kb) 545 546 547 548Strain fitness (log2 ratio) -2 -1 0 1 2 3at 544.932 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.023 kb on - strand, within GFF1225at 545.023 kb on - strand, within GFF1225at 545.193 kb on + strand, within GFF1225at 545.193 kb on + strand, within GFF1225at 545.193 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.203 kb on - strand, within GFF1225at 545.203 kb on - strand, within GFF1225at 545.253 kb on + strand, within GFF1225at 545.253 kb on + strand, within GFF1225at 545.253 kb on + strand, within GFF1225at 545.254 kb on - strand, within GFF1225at 545.431 kb on + strand, within GFF1225at 545.431 kb on + strand, within GFF1225at 545.432 kb on - strand, within GFF1225at 545.432 kb on - strand, within GFF1225at 545.432 kb on - strand, within GFF1225at 545.583 kb on + strand, within GFF1225at 545.583 kb on + strand, within GFF1225at 545.583 kb on + strand, within GFF1225at 545.674 kb on - strand, within GFF1225at 545.676 kb on + strand, within GFF1225at 545.676 kb on + strand, within GFF1225at 545.676 kb on + strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.677 kb on - strand, within GFF1225at 545.740 kb on - strand, within GFF1225at 545.740 kb on - strand, within GFF1225at 545.904 kb on + strandat 545.904 kb on + strandat 545.905 kb on - strandat 545.905 kb on - strandat 545.999 kb on + strandat 546.000 kb on - strandat 546.000 kb on - strandat 546.000 kb on - strandat 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.185 kb on + strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.186 kb on - strand, within GFF1226at 546.296 kb on + strand, within GFF1226at 546.296 kb on + strand, within GFF1226at 546.297 kb on - strand, within GFF1226at 546.297 kb on - strand, within GFF1226at 546.297 kb on - strand, within GFF1226at 546.386 kb on + strand, within GFF1226at 546.386 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.545 kb on + strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.546 kb on - strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.548 kb on + strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.549 kb on - strand, within GFF1226at 546.788 kb on + strand, within GFF1226at 546.788 kb on + strand, within GFF1226at 546.788 kb on + strand, within GFF1226at 546.788 kb on + strand, within GFF1226at 546.789 kb on - strand, within GFF1226at 546.789 kb on - strand, within GFF1226at 546.789 kb on - strand, within GFF1226at 547.482 kb on + strand, within GFF1227at 547.482 kb on + strand, within GFF1227at 547.482 kb on + strand, within GFF1227at 547.483 kb on - strand, within GFF1227at 547.483 kb on - strand, within GFF1227at 547.566 kb on + strand, within GFF1227at 547.566 kb on + strand, within GFF1227at 547.580 kb on - strand, within GFF1227at 547.659 kb on - strand, within GFF1227at 547.874 kb on + strandat 547.875 kb on - strandat 547.983 kb on + strandat 547.983 kb on + strandat 547.983 kb on + strandat 547.984 kb on - strandat 547.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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544,932 + GFF1225 0.17 -1.2
545,022 + GFF1225 0.25 +1.3
545,022 + GFF1225 0.25 -0.3
545,022 + GFF1225 0.25 +0.4
545,022 + GFF1225 0.25 -0.0
545,022 + GFF1225 0.25 +0.7
545,023 - GFF1225 0.25 -0.2
545,023 - GFF1225 0.25 +0.8
545,193 + GFF1225 0.39 -0.1
545,193 + GFF1225 0.39 -0.1
545,193 + GFF1225 0.39 -0.2
545,202 + GFF1225 0.40 -0.3
545,202 + GFF1225 0.40 -0.2
545,202 + GFF1225 0.40 -0.3
545,202 + GFF1225 0.40 +0.2
545,203 - GFF1225 0.40 +0.2
545,203 - GFF1225 0.40 -0.3
545,253 + GFF1225 0.44 +0.1
545,253 + GFF1225 0.44 -0.2
545,253 + GFF1225 0.44 -0.7
545,254 - GFF1225 0.44 +3.2
545,431 + GFF1225 0.59 -0.2
545,431 + GFF1225 0.59 -1.3
545,432 - GFF1225 0.60 -1.0
545,432 - GFF1225 0.60 -0.2
545,432 - GFF1225 0.60 -0.7
545,583 + GFF1225 0.72 -0.6
545,583 + GFF1225 0.72 +1.0
545,583 + GFF1225 0.72 -1.2
545,674 - GFF1225 0.80 +0.1
545,676 + GFF1225 0.80 -0.9
545,676 + GFF1225 0.80 +0.3
545,676 + GFF1225 0.80 +0.8
545,677 - GFF1225 0.80 +2.8
545,677 - GFF1225 0.80 +0.4
545,677 - GFF1225 0.80 +0.1
545,677 - GFF1225 0.80 +1.4
545,677 - GFF1225 0.80 +0.3
545,740 - GFF1225 0.86 -1.0
545,740 - GFF1225 0.86 -0.7
545,904 + -1.6
545,904 + -0.4
545,905 - +1.0
545,905 - +2.4
545,999 + -0.6
546,000 - -0.3
546,000 - -0.5
546,000 - -0.1
546,185 + GFF1226 0.20 -0.0
546,185 + GFF1226 0.20 -0.2
546,185 + GFF1226 0.20 -0.4
546,185 + GFF1226 0.20 -0.5
546,185 + GFF1226 0.20 -0.8
546,185 + GFF1226 0.20 -0.5
546,185 + GFF1226 0.20 +0.3
546,185 + GFF1226 0.20 -0.2
546,185 + GFF1226 0.20 -0.3
546,186 - GFF1226 0.20 +1.2
546,186 - GFF1226 0.20 -0.2
546,186 - GFF1226 0.20 +0.1
546,186 - GFF1226 0.20 +0.5
546,186 - GFF1226 0.20 -0.7
546,186 - GFF1226 0.20 -0.2
546,296 + GFF1226 0.28 +0.4
546,296 + GFF1226 0.28 +1.3
546,297 - GFF1226 0.29 +0.0
546,297 - GFF1226 0.29 -0.8
546,297 - GFF1226 0.29 -1.5
546,386 + GFF1226 0.35 +1.5
546,386 + GFF1226 0.35 +0.3
546,545 + GFF1226 0.47 +0.0
546,545 + GFF1226 0.47 -0.4
546,545 + GFF1226 0.47 -0.6
546,545 + GFF1226 0.47 +0.0
546,545 + GFF1226 0.47 -1.6
546,545 + GFF1226 0.47 +0.8
546,545 + GFF1226 0.47 +0.7
546,546 - GFF1226 0.47 -0.2
546,546 - GFF1226 0.47 +0.8
546,546 - GFF1226 0.47 -1.2
546,546 - GFF1226 0.47 -0.2
546,546 - GFF1226 0.47 -1.2
546,546 - GFF1226 0.47 -0.4
546,548 + GFF1226 0.47 -0.0
546,548 + GFF1226 0.47 -0.0
546,548 + GFF1226 0.47 -0.4
546,548 + GFF1226 0.47 +0.0
546,548 + GFF1226 0.47 -0.1
546,548 + GFF1226 0.47 -1.2
546,548 + GFF1226 0.47 -2.0
546,548 + GFF1226 0.47 -0.2
546,548 + GFF1226 0.47 -0.5
546,549 - GFF1226 0.47 -0.2
546,549 - GFF1226 0.47 -0.3
546,549 - GFF1226 0.47 -1.0
546,549 - GFF1226 0.47 -0.9
546,549 - GFF1226 0.47 +1.1
546,549 - GFF1226 0.47 -1.4
546,788 + GFF1226 0.65 -0.8
546,788 + GFF1226 0.65 -0.0
546,788 + GFF1226 0.65 +0.2
546,788 + GFF1226 0.65 -1.0
546,789 - GFF1226 0.65 +0.6
546,789 - GFF1226 0.65 -0.1
546,789 - GFF1226 0.65 -0.2
547,482 + GFF1227 0.36 -0.8
547,482 + GFF1227 0.36 -0.8
547,482 + GFF1227 0.36 +0.1
547,483 - GFF1227 0.36 +0.8
547,483 - GFF1227 0.36 -0.6
547,566 + GFF1227 0.51 +0.3
547,566 + GFF1227 0.51 -0.6
547,580 - GFF1227 0.53 -0.8
547,659 - GFF1227 0.67 +1.5
547,874 + -0.7
547,875 - -0.3
547,983 + -1.6
547,983 + +0.3
547,983 + +0.5
547,984 - -1.6
547,984 - -0.5

Or see this region's nucleotide sequence