Strain Fitness in Variovorax sp. SCN45 around GFF1210

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1209 and GFF1210 are separated by 15 nucleotidesGFF1210 and GFF1211 are separated by 23 nucleotides GFF1209 - hypothetical protein, at 526,818 to 528,755 GFF1209 GFF1210 - D-aminopeptidase dipeptide-binding protein DppA (EC 3.4.11.-), at 528,771 to 529,589 GFF1210 GFF1211 - D-aminopeptidase (EC 3.4.11.19), at 529,613 to 530,695 GFF1211 Position (kb) 528 529 530Strain fitness (log2 ratio) -2 -1 0 1 2at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.775 kb on + strand, within GFF1209at 527.775 kb on + strand, within GFF1209at 527.775 kb on + strand, within GFF1209at 527.776 kb on - strand, within GFF1209at 527.776 kb on - strand, within GFF1209at 527.776 kb on - strand, within GFF1209at 527.904 kb on + strand, within GFF1209at 528.267 kb on + strand, within GFF1209at 528.267 kb on + strand, within GFF1209at 528.268 kb on - strand, within GFF1209at 528.657 kb on + strandat 528.657 kb on + strandat 528.658 kb on - strandat 529.177 kb on + strand, within GFF1210at 529.178 kb on - strand, within GFF1210at 529.282 kb on + strand, within GFF1210at 529.283 kb on - strand, within GFF1210at 529.508 kb on - strandat 529.508 kb on - strandat 529.543 kb on + strandat 529.543 kb on + strandat 529.544 kb on - strandat 529.544 kb on - strandat 529.544 kb on - strandat 529.544 kb on - strandat 529.544 kb on - strandat 529.822 kb on - strand, within GFF1211at 529.822 kb on - strand, within GFF1211at 529.822 kb on - strand, within GFF1211at 529.822 kb on - strand, within GFF1211at 529.866 kb on + strand, within GFF1211at 529.867 kb on - strand, within GFF1211at 530.076 kb on + strand, within GFF1211at 530.076 kb on + strand, within GFF1211at 530.076 kb on + strand, within GFF1211at 530.077 kb on - strand, within GFF1211at 530.077 kb on - strand, within GFF1211at 530.245 kb on - strand, within GFF1211at 530.245 kb on - strand, within GFF1211at 530.369 kb on + strand, within GFF1211at 530.369 kb on + strand, within GFF1211at 530.369 kb on + strand, within GFF1211at 530.369 kb on + strand, within GFF1211at 530.370 kb on - strand, within GFF1211

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
527,772 + GFF1209 0.49 +0.3
527,772 + GFF1209 0.49 -0.2
527,772 + GFF1209 0.49 -0.3
527,772 + GFF1209 0.49 +0.5
527,772 + GFF1209 0.49 +1.2
527,772 + GFF1209 0.49 -1.2
527,772 + GFF1209 0.49 +1.2
527,773 - GFF1209 0.49 +0.8
527,773 - GFF1209 0.49 -0.1
527,773 - GFF1209 0.49 -0.9
527,773 - GFF1209 0.49 -0.8
527,773 - GFF1209 0.49 -0.5
527,775 + GFF1209 0.49 -0.1
527,775 + GFF1209 0.49 -0.3
527,775 + GFF1209 0.49 -0.1
527,776 - GFF1209 0.49 -0.2
527,776 - GFF1209 0.49 +0.7
527,776 - GFF1209 0.49 -1.5
527,904 + GFF1209 0.56 -0.8
528,267 + GFF1209 0.75 -0.2
528,267 + GFF1209 0.75 -0.2
528,268 - GFF1209 0.75 +0.2
528,657 + +0.2
528,657 + -0.3
528,658 - -0.5
529,177 + GFF1210 0.50 -1.8
529,178 - GFF1210 0.50 -0.5
529,282 + GFF1210 0.62 -0.8
529,283 - GFF1210 0.63 -0.4
529,508 - -1.1
529,508 - -1.0
529,543 + -0.9
529,543 + -2.6
529,544 - +1.2
529,544 - +0.1
529,544 - +0.7
529,544 - -0.2
529,544 - -0.6
529,822 - GFF1211 0.19 -1.5
529,822 - GFF1211 0.19 -0.6
529,822 - GFF1211 0.19 -1.5
529,822 - GFF1211 0.19 -1.8
529,866 + GFF1211 0.23 -0.6
529,867 - GFF1211 0.23 -0.5
530,076 + GFF1211 0.43 +0.8
530,076 + GFF1211 0.43 -0.5
530,076 + GFF1211 0.43 +1.8
530,077 - GFF1211 0.43 +0.3
530,077 - GFF1211 0.43 +0.5
530,245 - GFF1211 0.58 +0.8
530,245 - GFF1211 0.58 +2.4
530,369 + GFF1211 0.70 +0.2
530,369 + GFF1211 0.70 -0.5
530,369 + GFF1211 0.70 -1.3
530,369 + GFF1211 0.70 -0.6
530,370 - GFF1211 0.70 +0.6

Or see this region's nucleotide sequence