Strain Fitness in Variovorax sp. SCN45 around GFF1092

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1091 and GFF1092 are separated by 250 nucleotidesGFF1092 and GFF1093 are separated by 30 nucleotides GFF1091 - Exopolyphosphatase (EC 3.6.1.11), at 403,002 to 404,522 GFF1091 GFF1092 - Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1), at 404,773 to 405,807 GFF1092 GFF1093 - Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1), at 405,838 to 406,920 GFF1093 Position (kb) 404 405 406Strain fitness (log2 ratio) -2 -1 0 1 2at 403.886 kb on - strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.912 kb on + strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 403.913 kb on - strand, within GFF1091at 404.032 kb on + strand, within GFF1091at 404.032 kb on + strand, within GFF1091at 404.033 kb on - strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.164 kb on + strand, within GFF1091at 404.422 kb on + strandat 404.422 kb on + strandat 404.423 kb on - strandat 404.527 kb on + strandat 404.528 kb on - strandat 404.611 kb on + strandat 404.664 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.696 kb on + strandat 404.697 kb on - strandat 404.697 kb on - strandat 404.697 kb on - strandat 404.697 kb on - strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.718 kb on + strandat 404.746 kb on + strandat 404.746 kb on + strandat 404.747 kb on - strandat 404.754 kb on - strandat 404.754 kb on - strandat 404.754 kb on - strandat 404.759 kb on + strandat 404.884 kb on + strand, within GFF1092at 404.884 kb on + strand, within GFF1092at 404.885 kb on - strand, within GFF1092at 404.885 kb on - strand, within GFF1092at 404.885 kb on - strand, within GFF1092at 404.935 kb on + strand, within GFF1092at 404.936 kb on - strand, within GFF1092at 404.936 kb on - strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.149 kb on - strand, within GFF1092at 405.149 kb on - strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.281 kb on - strand, within GFF1092at 405.281 kb on - strand, within GFF1092at 405.281 kb on - strand, within GFF1092at 405.424 kb on + strand, within GFF1092at 405.425 kb on - strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.431 kb on - strand, within GFF1092at 405.431 kb on - strand, within GFF1092at 405.431 kb on - strand, within GFF1092at 405.454 kb on + strand, within GFF1092at 405.454 kb on + strand, within GFF1092at 405.455 kb on - strand, within GFF1092at 405.455 kb on - strand, within GFF1092at 405.550 kb on + strand, within GFF1092at 405.551 kb on - strand, within GFF1092at 405.551 kb on - strand, within GFF1092at 405.679 kb on + strand, within GFF1092at 405.679 kb on + strand, within GFF1092at 405.679 kb on + strand, within GFF1092at 405.680 kb on - strand, within GFF1092at 405.715 kb on + strandat 405.716 kb on - strandat 405.716 kb on - strandat 405.716 kb on - strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.800 kb on - strandat 405.800 kb on - strandat 405.800 kb on - strandat 405.800 kb on - strandat 405.800 kb on - strandat 405.805 kb on + strandat 405.805 kb on + strandat 405.805 kb on + strandat 405.805 kb on + strandat 405.805 kb on + strandat 405.806 kb on - strandat 405.806 kb on - strandat 406.111 kb on + strand, within GFF1093at 406.162 kb on + strand, within GFF1093at 406.163 kb on - strand, within GFF1093at 406.163 kb on - strand, within GFF1093at 406.183 kb on + strand, within GFF1093at 406.183 kb on + strand, within GFF1093at 406.183 kb on + strand, within GFF1093at 406.184 kb on - strand, within GFF1093at 406.184 kb on - strand, within GFF1093at 406.258 kb on - strand, within GFF1093at 406.336 kb on + strand, within GFF1093at 406.336 kb on + strand, within GFF1093at 406.337 kb on - strand, within GFF1093at 406.337 kb on - strand, within GFF1093at 406.465 kb on - strand, within GFF1093at 406.465 kb on - strand, within GFF1093at 406.570 kb on + strand, within GFF1093

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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403,886 - GFF1091 0.58 -0.4
403,912 + GFF1091 0.60 -0.1
403,912 + GFF1091 0.60 -0.4
403,912 + GFF1091 0.60 -0.5
403,912 + GFF1091 0.60 -0.5
403,912 + GFF1091 0.60 +0.9
403,912 + GFF1091 0.60 -0.4
403,913 - GFF1091 0.60 -0.7
403,913 - GFF1091 0.60 -0.2
403,913 - GFF1091 0.60 +0.2
403,913 - GFF1091 0.60 -0.9
403,913 - GFF1091 0.60 -0.2
403,913 - GFF1091 0.60 -0.1
404,032 + GFF1091 0.68 -0.6
404,032 + GFF1091 0.68 -0.3
404,033 - GFF1091 0.68 -0.2
404,164 + GFF1091 0.76 +1.4
404,164 + GFF1091 0.76 -0.2
404,164 + GFF1091 0.76 -2.0
404,164 + GFF1091 0.76 -1.0
404,164 + GFF1091 0.76 -0.5
404,164 + GFF1091 0.76 -0.7
404,422 + +0.9
404,422 + +0.1
404,423 - +2.6
404,527 + +0.6
404,528 - +0.9
404,611 + +0.5
404,664 + +0.7
404,696 + +2.3
404,696 + +0.2
404,696 + -0.2
404,696 + +0.3
404,696 + +1.4
404,696 + -0.7
404,696 + +0.1
404,697 - -0.2
404,697 - -0.5
404,697 - +0.1
404,697 - -0.9
404,718 + -0.8
404,718 + +1.1
404,718 + -0.9
404,718 + -0.2
404,718 + +0.5
404,718 + +0.0
404,746 + -0.1
404,746 + +0.7
404,747 - -0.4
404,754 - -2.1
404,754 - -0.3
404,754 - -0.7
404,759 + -0.2
404,884 + GFF1092 0.11 -1.4
404,884 + GFF1092 0.11 +0.7
404,885 - GFF1092 0.11 -2.3
404,885 - GFF1092 0.11 +0.3
404,885 - GFF1092 0.11 -0.9
404,935 + GFF1092 0.16 +0.7
404,936 - GFF1092 0.16 -0.0
404,936 - GFF1092 0.16 +0.3
405,148 + GFF1092 0.36 +0.1
405,148 + GFF1092 0.36 +0.8
405,148 + GFF1092 0.36 +1.2
405,148 + GFF1092 0.36 +0.0
405,148 + GFF1092 0.36 -1.2
405,148 + GFF1092 0.36 -0.4
405,148 + GFF1092 0.36 +0.4
405,148 + GFF1092 0.36 +1.9
405,149 - GFF1092 0.36 +0.8
405,149 - GFF1092 0.36 +0.9
405,280 + GFF1092 0.49 +0.2
405,280 + GFF1092 0.49 -0.5
405,280 + GFF1092 0.49 +0.1
405,280 + GFF1092 0.49 -0.9
405,281 - GFF1092 0.49 +0.1
405,281 - GFF1092 0.49 -0.9
405,281 - GFF1092 0.49 +0.9
405,424 + GFF1092 0.63 -0.6
405,425 - GFF1092 0.63 +1.9
405,430 + GFF1092 0.63 +1.0
405,430 + GFF1092 0.63 -0.3
405,430 + GFF1092 0.63 +0.9
405,430 + GFF1092 0.63 -0.4
405,430 + GFF1092 0.63 -0.9
405,431 - GFF1092 0.64 +0.1
405,431 - GFF1092 0.64 +0.3
405,431 - GFF1092 0.64 +0.9
405,454 + GFF1092 0.66 -0.1
405,454 + GFF1092 0.66 -0.8
405,455 - GFF1092 0.66 +0.2
405,455 - GFF1092 0.66 -0.4
405,550 + GFF1092 0.75 +0.0
405,551 - GFF1092 0.75 -0.1
405,551 - GFF1092 0.75 +0.0
405,679 + GFF1092 0.88 -0.1
405,679 + GFF1092 0.88 +1.4
405,679 + GFF1092 0.88 +0.6
405,680 - GFF1092 0.88 +0.5
405,715 + +0.3
405,716 - -1.4
405,716 - +0.3
405,716 - -2.0
405,799 + -0.0
405,799 + -0.4
405,799 + +0.0
405,799 + +0.0
405,799 + -0.2
405,799 + +0.1
405,799 + -1.2
405,799 + +0.0
405,799 + -0.1
405,800 - +0.9
405,800 - -0.8
405,800 - +1.5
405,800 - -0.3
405,800 - +0.9
405,805 + -0.7
405,805 + -1.2
405,805 + +0.4
405,805 + -0.4
405,805 + -0.9
405,806 - +0.2
405,806 - +1.0
406,111 + GFF1093 0.25 -0.4
406,162 + GFF1093 0.30 +0.4
406,163 - GFF1093 0.30 -0.3
406,163 - GFF1093 0.30 +0.1
406,183 + GFF1093 0.32 -0.3
406,183 + GFF1093 0.32 -2.3
406,183 + GFF1093 0.32 -0.3
406,184 - GFF1093 0.32 +0.2
406,184 - GFF1093 0.32 -0.9
406,258 - GFF1093 0.39 +0.5
406,336 + GFF1093 0.46 +0.1
406,336 + GFF1093 0.46 -0.5
406,337 - GFF1093 0.46 -1.1
406,337 - GFF1093 0.46 -0.6
406,465 - GFF1093 0.58 +0.9
406,465 - GFF1093 0.58 +0.5
406,570 + GFF1093 0.68 -1.3

Or see this region's nucleotide sequence