Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF106 and GFF107 overlap by 4 nucleotides GFF107 and GFF108 are separated by 68 nucleotides GFF108 and GFF109 are separated by 141 nucleotides
GFF106 - no description, at 133,745 to 134,890
GFF106
GFF107 - General secretion pathway protein K, at 134,887 to 135,846
GFF107
GFF108 - General secretion pathway protein G, at 135,915 to 136,385
GFF108
GFF109 - Protein lysine acetyltransferase Pat (EC 2.3.1.-), at 136,527 to 139,229
GFF109
Position (kb) 134
135
136 Strain fitness (log2 ratio) -1
0
1 at 133.930 kb on - strand, within GFF106 at 134.087 kb on + strand, within GFF106 at 134.088 kb on - strand, within GFF106 at 134.166 kb on + strand, within GFF106 at 134.166 kb on + strand, within GFF106 at 134.167 kb on - strand, within GFF106 at 134.338 kb on + strand, within GFF106 at 134.440 kb on + strand, within GFF106 at 134.440 kb on + strand, within GFF106 at 134.440 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.777 kb on - strand at 135.623 kb on + strand, within GFF107 at 135.623 kb on + strand, within GFF107 at 136.015 kb on + strand, within GFF108 at 136.016 kb on - strand, within GFF108 at 136.016 kb on - strand, within GFF108 at 136.021 kb on + strand, within GFF108 at 136.138 kb on + strand, within GFF108 at 136.139 kb on - strand, within GFF108
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 133,930 - GFF106 0.16 -0.6 134,087 + GFF106 0.30 +0.2 134,088 - GFF106 0.30 -0.5 134,166 + GFF106 0.37 +0.1 134,166 + GFF106 0.37 -0.7 134,167 - GFF106 0.37 +0.4 134,338 + GFF106 0.52 -1.5 134,440 + GFF106 0.61 -0.4 134,440 + GFF106 0.61 +0.7 134,440 + GFF106 0.61 +0.4 134,723 + GFF106 0.85 +1.4 134,723 + GFF106 0.85 -0.1 134,723 + GFF106 0.85 +0.6 134,723 + GFF106 0.85 +0.5 134,777 - -0.6 135,623 + GFF107 0.77 +0.5 135,623 + GFF107 0.77 +0.4 136,015 + GFF108 0.21 +0.6 136,016 - GFF108 0.21 +0.2 136,016 - GFF108 0.21 -0.5 136,021 + GFF108 0.23 +0.2 136,138 + GFF108 0.47 +0.1 136,139 - GFF108 0.48 +0.6
Or see this region's nucleotide sequence