Strain Fitness in Variovorax sp. SCN45 around GFF1044

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1041 and GFF1043 overlap by 4 nucleotidesGFF1043 and GFF1042 overlap by 2 nucleotidesGFF1042 and GFF1044 are separated by 13 nucleotidesGFF1044 and GFF1045 are separated by 31 nucleotides GFF1041 - Transcriptional regulator, AsnC family, at 358,263 to 358,721 GFF1041 GFF1043 - no description, at 358,718 to 358,846 GFF1043 GFF1042 - Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18), at 358,845 to 359,453 GFF1042 GFF1044 - hypothetical protein, at 359,467 to 359,856 GFF1044 GFF1045 - Putative phosphatase, at 359,888 to 361,765 GFF1045 Position (kb) 359 360Strain fitness (log2 ratio) -2 -1 0 1 2at 358.480 kb on + strand, within GFF1041at 358.480 kb on + strand, within GFF1041at 358.481 kb on - strand, within GFF1041at 358.567 kb on + strand, within GFF1041at 358.567 kb on + strand, within GFF1041at 358.813 kb on + strand, within GFF1043at 359.166 kb on + strand, within GFF1042at 359.166 kb on + strand, within GFF1042at 359.166 kb on + strand, within GFF1042at 359.167 kb on - strand, within GFF1042at 359.244 kb on + strand, within GFF1042at 359.245 kb on - strand, within GFF1042at 359.400 kb on + strandat 359.400 kb on + strandat 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.546 kb on + strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.547 kb on - strand, within GFF1044at 359.724 kb on - strand, within GFF1044at 359.724 kb on - strand, within GFF1044at 359.735 kb on + strand, within GFF1044at 359.735 kb on + strand, within GFF1044at 359.736 kb on - strand, within GFF1044at 360.168 kb on + strand, within GFF1045at 360.168 kb on + strand, within GFF1045at 360.168 kb on + strand, within GFF1045at 360.168 kb on + strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.169 kb on - strand, within GFF1045at 360.282 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.480 kb on + strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.481 kb on - strand, within GFF1045at 360.667 kb on - strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.678 kb on + strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.679 kb on - strand, within GFF1045at 360.689 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.768 kb on + strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.769 kb on - strand, within GFF1045at 360.774 kb on + strand, within GFF1045at 360.774 kb on + strand, within GFF1045at 360.774 kb on + strand, within GFF1045at 360.774 kb on + strand, within GFF1045at 360.775 kb on - strand, within GFF1045at 360.775 kb on - strand, within GFF1045at 360.775 kb on - strand, within GFF1045at 360.775 kb on - strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.801 kb on + strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045at 360.802 kb on - strand, within GFF1045

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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358,480 + GFF1041 0.47 +0.1
358,480 + GFF1041 0.47 -0.7
358,481 - GFF1041 0.47 +0.9
358,567 + GFF1041 0.66 +0.9
358,567 + GFF1041 0.66 -0.3
358,813 + GFF1043 0.74 +1.1
359,166 + GFF1042 0.53 +0.1
359,166 + GFF1042 0.53 +0.4
359,166 + GFF1042 0.53 +0.2
359,167 - GFF1042 0.53 -0.0
359,244 + GFF1042 0.66 -0.6
359,245 - GFF1042 0.66 -0.9
359,400 + -0.7
359,400 + -0.6
359,546 + GFF1044 0.20 +0.3
359,546 + GFF1044 0.20 -0.8
359,546 + GFF1044 0.20 -0.2
359,546 + GFF1044 0.20 +0.1
359,546 + GFF1044 0.20 -0.6
359,546 + GFF1044 0.20 -0.0
359,547 - GFF1044 0.21 +1.7
359,547 - GFF1044 0.21 +0.5
359,547 - GFF1044 0.21 -0.2
359,547 - GFF1044 0.21 +0.0
359,547 - GFF1044 0.21 +0.6
359,547 - GFF1044 0.21 +0.1
359,547 - GFF1044 0.21 -0.3
359,724 - GFF1044 0.66 +0.1
359,724 - GFF1044 0.66 -0.6
359,735 + GFF1044 0.69 +0.9
359,735 + GFF1044 0.69 +0.6
359,736 - GFF1044 0.69 -0.5
360,168 + GFF1045 0.15 -0.1
360,168 + GFF1045 0.15 -0.9
360,168 + GFF1045 0.15 +0.7
360,168 + GFF1045 0.15 +0.0
360,169 - GFF1045 0.15 +0.1
360,169 - GFF1045 0.15 -0.5
360,169 - GFF1045 0.15 -0.6
360,169 - GFF1045 0.15 +0.3
360,169 - GFF1045 0.15 +0.9
360,169 - GFF1045 0.15 -0.4
360,169 - GFF1045 0.15 -1.6
360,169 - GFF1045 0.15 +0.3
360,282 + GFF1045 0.21 -0.4
360,480 + GFF1045 0.32 -0.1
360,480 + GFF1045 0.32 -0.4
360,480 + GFF1045 0.32 -0.4
360,480 + GFF1045 0.32 -1.8
360,480 + GFF1045 0.32 +0.7
360,481 - GFF1045 0.32 -0.1
360,481 - GFF1045 0.32 +0.3
360,481 - GFF1045 0.32 +0.3
360,481 - GFF1045 0.32 +0.3
360,481 - GFF1045 0.32 -0.8
360,667 - GFF1045 0.41 +0.3
360,678 + GFF1045 0.42 +1.1
360,678 + GFF1045 0.42 -0.1
360,678 + GFF1045 0.42 -1.9
360,678 + GFF1045 0.42 -0.1
360,678 + GFF1045 0.42 -1.2
360,678 + GFF1045 0.42 -0.6
360,678 + GFF1045 0.42 -0.2
360,678 + GFF1045 0.42 +0.9
360,679 - GFF1045 0.42 -1.3
360,679 - GFF1045 0.42 -1.3
360,679 - GFF1045 0.42 -0.1
360,679 - GFF1045 0.42 +0.1
360,679 - GFF1045 0.42 -1.7
360,689 + GFF1045 0.43 -1.0
360,768 + GFF1045 0.47 -0.9
360,768 + GFF1045 0.47 +0.6
360,768 + GFF1045 0.47 +0.3
360,768 + GFF1045 0.47 +0.5
360,768 + GFF1045 0.47 -0.9
360,768 + GFF1045 0.47 -0.2
360,768 + GFF1045 0.47 -1.4
360,768 + GFF1045 0.47 -0.4
360,768 + GFF1045 0.47 -2.1
360,768 + GFF1045 0.47 +1.9
360,768 + GFF1045 0.47 -2.1
360,768 + GFF1045 0.47 -1.2
360,768 + GFF1045 0.47 -0.8
360,768 + GFF1045 0.47 +0.6
360,769 - GFF1045 0.47 -0.3
360,769 - GFF1045 0.47 -0.3
360,769 - GFF1045 0.47 -1.3
360,769 - GFF1045 0.47 +0.0
360,769 - GFF1045 0.47 -1.1
360,769 - GFF1045 0.47 -0.1
360,769 - GFF1045 0.47 -1.1
360,769 - GFF1045 0.47 -0.6
360,769 - GFF1045 0.47 -0.3
360,774 + GFF1045 0.47 -1.1
360,774 + GFF1045 0.47 +1.4
360,774 + GFF1045 0.47 +1.3
360,774 + GFF1045 0.47 +0.6
360,775 - GFF1045 0.47 +0.4
360,775 - GFF1045 0.47 +0.1
360,775 - GFF1045 0.47 -0.4
360,775 - GFF1045 0.47 -0.6
360,801 + GFF1045 0.49 -0.9
360,801 + GFF1045 0.49 -1.5
360,801 + GFF1045 0.49 -0.1
360,801 + GFF1045 0.49 -1.0
360,801 + GFF1045 0.49 +1.9
360,801 + GFF1045 0.49 +0.3
360,801 + GFF1045 0.49 -0.4
360,802 - GFF1045 0.49 -1.1
360,802 - GFF1045 0.49 -0.3
360,802 - GFF1045 0.49 -0.3
360,802 - GFF1045 0.49 -1.0
360,802 - GFF1045 0.49 -0.2
360,802 - GFF1045 0.49 +0.6
360,802 - GFF1045 0.49 +0.3

Or see this region's nucleotide sequence