Strain Fitness in Variovorax sp. SCN45 around GFF1025

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1024 and GFF1025 are separated by 38 nucleotidesGFF1025 and GFF1026 overlap by 4 nucleotidesGFF1026 and GFF1027 are separated by 86 nucleotides GFF1024 - Aldo/keto reductase, SCO4109 family, at 339,999 to 340,967 GFF1024 GFF1025 - Chromate transport protein ChrA, at 341,006 to 341,605 GFF1025 GFF1026 - Probable chromate transporter protein, at 341,602 to 342,168 GFF1026 GFF1027 - Ribonuclease BN, at 342,255 to 343,178 GFF1027 Position (kb) 341 342Strain fitness (log2 ratio) -2 -1 0 1 2at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.240 kb on + strand, within GFF1024at 340.240 kb on + strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.297 kb on + strand, within GFF1024at 340.297 kb on + strand, within GFF1024at 340.297 kb on + strand, within GFF1024at 340.298 kb on - strand, within GFF1024at 340.298 kb on - strand, within GFF1024at 340.298 kb on - strand, within GFF1024at 340.331 kb on - strand, within GFF1024at 340.402 kb on + strand, within GFF1024at 340.403 kb on - strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.492 kb on + strand, within GFF1024at 340.492 kb on + strand, within GFF1024at 340.492 kb on + strand, within GFF1024at 340.597 kb on + strand, within GFF1024at 340.598 kb on - strand, within GFF1024at 340.598 kb on - strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.807 kb on + strand, within GFF1024at 340.807 kb on + strand, within GFF1024at 340.808 kb on - strand, within GFF1024at 340.808 kb on - strand, within GFF1024at 340.808 kb on - strand, within GFF1024at 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.083 kb on + strand, within GFF1025at 341.084 kb on - strand, within GFF1025at 341.084 kb on - strand, within GFF1025at 341.101 kb on + strand, within GFF1025at 341.102 kb on - strand, within GFF1025at 341.102 kb on - strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.454 kb on - strand, within GFF1025at 341.493 kb on + strand, within GFF1025at 341.494 kb on - strand, within GFF1025at 341.494 kb on - strand, within GFF1025at 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.787 kb on + strand, within GFF1026at 341.787 kb on + strand, within GFF1026at 341.787 kb on + strand, within GFF1026at 341.787 kb on + strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.850 kb on - strand, within GFF1026at 341.850 kb on - strand, within GFF1026at 341.850 kb on - strand, within GFF1026at 341.858 kb on + strand, within GFF1026at 341.858 kb on + strand, within GFF1026at 341.859 kb on - strand, within GFF1026at 341.859 kb on - strand, within GFF1026at 341.942 kb on + strand, within GFF1026at 341.942 kb on + strand, within GFF1026at 341.943 kb on - strand, within GFF1026at 341.992 kb on + strand, within GFF1026at 341.992 kb on + strand, within GFF1026at 341.992 kb on + strand, within GFF1026at 341.992 kb on + strand, within GFF1026at 341.993 kb on - strand, within GFF1026at 341.993 kb on - strand, within GFF1026at 342.185 kb on - strandat 342.185 kb on - strandat 342.185 kb on - strandat 342.185 kb on - strandat 342.248 kb on + strandat 342.248 kb on + strandat 342.248 kb on + strandat 342.248 kb on + strandat 342.249 kb on - strandat 342.249 kb on - strandat 342.249 kb on - strandat 342.249 kb on - strandat 342.321 kb on + strandat 342.322 kb on - strandat 342.322 kb on - strandat 342.322 kb on - strandat 342.351 kb on + strand, within GFF1027at 342.352 kb on - strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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340,183 + GFF1024 0.19 +0.0
340,183 + GFF1024 0.19 +0.2
340,183 + GFF1024 0.19 +0.1
340,183 + GFF1024 0.19 +0.4
340,183 + GFF1024 0.19 +0.5
340,183 + GFF1024 0.19 +0.2
340,183 + GFF1024 0.19 -0.2
340,183 + GFF1024 0.19 +0.9
340,184 - GFF1024 0.19 +0.1
340,184 - GFF1024 0.19 -0.5
340,184 - GFF1024 0.19 -0.3
340,184 - GFF1024 0.19 +1.3
340,184 - GFF1024 0.19 -1.7
340,184 - GFF1024 0.19 -0.5
340,184 - GFF1024 0.19 +0.9
340,184 - GFF1024 0.19 -0.7
340,184 - GFF1024 0.19 -0.6
340,240 + GFF1024 0.25 +0.1
340,240 + GFF1024 0.25 +0.9
340,241 - GFF1024 0.25 -0.5
340,241 - GFF1024 0.25 -0.9
340,241 - GFF1024 0.25 -0.1
340,241 - GFF1024 0.25 -0.3
340,241 - GFF1024 0.25 -0.3
340,297 + GFF1024 0.31 -0.6
340,297 + GFF1024 0.31 -1.3
340,297 + GFF1024 0.31 -0.1
340,298 - GFF1024 0.31 +1.4
340,298 - GFF1024 0.31 -0.6
340,298 - GFF1024 0.31 -0.5
340,331 - GFF1024 0.34 -0.0
340,402 + GFF1024 0.42 +0.3
340,403 - GFF1024 0.42 -0.7
340,411 + GFF1024 0.43 -0.1
340,411 + GFF1024 0.43 +0.2
340,411 + GFF1024 0.43 -1.5
340,411 + GFF1024 0.43 +1.0
340,411 + GFF1024 0.43 -0.1
340,411 + GFF1024 0.43 +0.2
340,411 + GFF1024 0.43 -0.5
340,411 + GFF1024 0.43 -0.6
340,412 - GFF1024 0.43 -0.4
340,412 - GFF1024 0.43 +0.2
340,412 - GFF1024 0.43 +0.3
340,412 - GFF1024 0.43 -1.1
340,412 - GFF1024 0.43 -0.7
340,412 - GFF1024 0.43 +1.1
340,492 + GFF1024 0.51 +1.9
340,492 + GFF1024 0.51 +0.4
340,492 + GFF1024 0.51 -2.0
340,597 + GFF1024 0.62 +0.5
340,598 - GFF1024 0.62 -0.2
340,598 - GFF1024 0.62 -1.0
340,657 + GFF1024 0.68 -0.1
340,657 + GFF1024 0.68 -0.9
340,657 + GFF1024 0.68 -0.5
340,657 + GFF1024 0.68 -0.9
340,657 + GFF1024 0.68 -0.2
340,657 + GFF1024 0.68 +0.6
340,657 + GFF1024 0.68 -0.7
340,657 + GFF1024 0.68 -0.6
340,658 - GFF1024 0.68 +0.3
340,658 - GFF1024 0.68 +0.8
340,658 - GFF1024 0.68 +0.1
340,658 - GFF1024 0.68 -0.6
340,658 - GFF1024 0.68 -1.5
340,658 - GFF1024 0.68 -0.3
340,658 - GFF1024 0.68 -0.3
340,658 - GFF1024 0.68 +0.0
340,807 + GFF1024 0.83 +0.7
340,807 + GFF1024 0.83 +0.1
340,808 - GFF1024 0.83 -0.7
340,808 - GFF1024 0.83 -1.2
340,808 - GFF1024 0.83 -0.9
341,018 + -0.2
341,018 + -0.4
341,018 + -0.4
341,018 + -0.2
341,018 + +0.3
341,018 + -0.4
341,018 + -0.5
341,083 + GFF1025 0.13 +1.9
341,084 - GFF1025 0.13 -0.5
341,084 - GFF1025 0.13 -0.1
341,101 + GFF1025 0.16 -0.8
341,102 - GFF1025 0.16 +0.1
341,102 - GFF1025 0.16 -0.0
341,265 + GFF1025 0.43 -0.0
341,265 + GFF1025 0.43 -0.7
341,265 + GFF1025 0.43 -0.5
341,265 + GFF1025 0.43 -0.0
341,265 + GFF1025 0.43 -0.9
341,266 - GFF1025 0.43 +0.3
341,266 - GFF1025 0.43 -1.9
341,266 - GFF1025 0.43 -1.1
341,266 - GFF1025 0.43 -1.3
341,266 - GFF1025 0.43 -1.7
341,454 - GFF1025 0.75 +0.9
341,493 + GFF1025 0.81 -0.2
341,494 - GFF1025 0.81 +0.3
341,494 - GFF1025 0.81 -1.1
341,556 + +0.4
341,556 + -0.4
341,556 + -0.2
341,556 + +0.6
341,556 + -0.6
341,556 + +0.3
341,556 + -0.8
341,556 + -0.2
341,557 - -0.4
341,557 - -0.4
341,557 - -0.5
341,557 - -0.3
341,557 - -1.7
341,557 - -0.5
341,557 - -0.4
341,557 - -0.0
341,787 + GFF1026 0.33 -0.4
341,787 + GFF1026 0.33 -1.3
341,787 + GFF1026 0.33 -0.6
341,787 + GFF1026 0.33 +0.7
341,788 - GFF1026 0.33 +0.1
341,788 - GFF1026 0.33 -0.5
341,788 - GFF1026 0.33 -2.1
341,788 - GFF1026 0.33 -0.3
341,850 - GFF1026 0.44 -1.4
341,850 - GFF1026 0.44 +0.6
341,850 - GFF1026 0.44 +0.1
341,858 + GFF1026 0.45 -1.6
341,858 + GFF1026 0.45 +0.5
341,859 - GFF1026 0.45 -1.8
341,859 - GFF1026 0.45 -0.3
341,942 + GFF1026 0.60 +0.8
341,942 + GFF1026 0.60 +0.2
341,943 - GFF1026 0.60 +0.8
341,992 + GFF1026 0.69 -0.5
341,992 + GFF1026 0.69 -0.6
341,992 + GFF1026 0.69 +0.1
341,992 + GFF1026 0.69 +1.1
341,993 - GFF1026 0.69 -0.2
341,993 - GFF1026 0.69 -0.6
342,185 - +0.5
342,185 - +0.1
342,185 - -0.9
342,185 - +0.3
342,248 + -0.2
342,248 + -0.1
342,248 + -0.3
342,248 + -1.0
342,249 - +0.7
342,249 - +0.9
342,249 - -0.6
342,249 - -1.0
342,321 + -0.1
342,322 - -1.0
342,322 - -1.1
342,322 - -1.8
342,351 + GFF1027 0.10 +0.3
342,352 - GFF1027 0.10 -0.9
342,354 + GFF1027 0.11 -0.1
342,354 + GFF1027 0.11 -0.2
342,354 + GFF1027 0.11 -0.3
342,354 + GFF1027 0.11 +0.5
342,354 + GFF1027 0.11 +0.7
342,354 + GFF1027 0.11 +1.1
342,354 + GFF1027 0.11 -0.3
342,354 + GFF1027 0.11 -0.8
342,355 - GFF1027 0.11 -0.2
342,355 - GFF1027 0.11 -0.6
342,355 - GFF1027 0.11 -0.5
342,355 - GFF1027 0.11 -0.7
342,355 - GFF1027 0.11 -0.2
342,355 - GFF1027 0.11 +0.5
342,355 - GFF1027 0.11 -0.0

Or see this region's nucleotide sequence