Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF993 and GFF994 overlap by 8 nucleotides GFF994 and GFF995 overlap by 4 nucleotides GFF995 and GFF996 are separated by 16 nucleotides
GFF993 - Type IV pilus biogenesis protein PilF, at 312,147 to 313,001
GFF993
GFF994 - Cytoskeleton protein RodZ, at 312,994 to 313,959
GFF994
GFF995 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3), at 313,956 to 315,230
GFF995
GFF996 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 315,247 to 316,557
GFF996
Position (kb) 313
314
315
316 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 312.975 kb on + strand at 312.975 kb on + strand at 312.975 kb on + strand at 312.976 kb on - strand at 312.976 kb on - strand at 312.976 kb on - strand at 312.976 kb on - strand at 312.976 kb on - strand at 313.202 kb on + strand, within GFF994 at 313.203 kb on - strand, within GFF994 at 313.596 kb on - strand, within GFF994 at 313.625 kb on + strand, within GFF994 at 313.625 kb on + strand, within GFF994 at 313.625 kb on + strand, within GFF994 at 313.625 kb on + strand, within GFF994 at 313.625 kb on + strand, within GFF994 at 313.625 kb on + strand, within GFF994 at 313.626 kb on - strand, within GFF994 at 313.626 kb on - strand, within GFF994 at 313.626 kb on - strand, within GFF994 at 313.626 kb on - strand, within GFF994 at 313.626 kb on - strand, within GFF994 at 313.626 kb on - strand, within GFF994
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 312,975 + +3.8 312,975 + +4.0 312,975 + +4.0 312,976 - +3.8 312,976 - +3.0 312,976 - +2.9 312,976 - +3.0 312,976 - +3.0 313,202 + GFF994 0.22 -0.6 313,203 - GFF994 0.22 -1.0 313,596 - GFF994 0.62 -0.1 313,625 + GFF994 0.65 -1.1 313,625 + GFF994 0.65 -0.0 313,625 + GFF994 0.65 -1.5 313,625 + GFF994 0.65 +1.2 313,625 + GFF994 0.65 -0.2 313,625 + GFF994 0.65 +0.2 313,626 - GFF994 0.65 -0.6 313,626 - GFF994 0.65 -0.1 313,626 - GFF994 0.65 +0.2 313,626 - GFF994 0.65 +0.2 313,626 - GFF994 0.65 -1.5 313,626 - GFF994 0.65 -0.7
Or see this region's nucleotide sequence