Strain Fitness in Variovorax sp. SCN45 around GFF97

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
110,069	+		GFF96	0.46	+1.0
110,069	+		GFF96	0.46	+1.5
110,070	-		GFF96	0.46	+0.3
110,070	-		GFF96	0.46	-1.4
110,075	+		GFF96	0.47	-0.8
110,075	+		GFF96	0.47	+3.0
110,076	-		GFF96	0.47	+0.3
110,076	-		GFF96	0.47	-0.7
110,076	-		GFF96	0.47	-1.1
110,076	-		GFF96	0.47	+0.2
110,204	+		GFF96	0.67	-0.7
110,204	+		GFF96	0.67	+1.3
110,205	-		GFF96	0.67	+0.7
110,205	-		GFF96	0.67	-0.8
110,648	+				-0.8
110,648	+				+0.4
110,648	+				-0.9
111,116	+				+0.3
111,494	+				+1.0
111,495	-				-0.8
111,495	-				-1.2
111,557	+				-0.4
111,558	-				-0.3
111,560	+				+0.2
111,560	+				+0.5
111,561	-				-0.4
111,561	-				-0.4
111,651	-				+0.3
111,687	-				+0.3
111,687	-				-1.0
111,687	-				-0.6
111,951	-		GFF97	0.11	-0.4
112,054	-		GFF97	0.12	-0.5
112,054	-		GFF97	0.12	+0.2
112,054	-		GFF97	0.12	+0.1
112,127	+		GFF97	0.12	+0.1
112,127	+		GFF97	0.12	+1.0
112,127	+		GFF97	0.12	-0.1
112,128	-		GFF97	0.12	+0.1
112,128	-		GFF97	0.12	+0.5
112,128	-		GFF97	0.12	+0.8
112,128	-		GFF97	0.12	+0.9
112,196	+		GFF97	0.13	-1.7
112,359	-		GFF97	0.14	-1.5
112,443	-		GFF97	0.15	-0.2
112,443	-		GFF97	0.15	-0.9
112,443	-		GFF97	0.15	-0.2
112,505	+		GFF97	0.15	-1.2
112,505	+		GFF97	0.15	-0.4
112,505	+		GFF97	0.15	+0.8
112,506	-		GFF97	0.15	+0.1
112,506	-		GFF97	0.15	-1.0
112,550	+		GFF97	0.16	-0.2
112,556	+		GFF97	0.16	+0.6
112,556	+		GFF97	0.16	+0.4
112,557	-		GFF97	0.16	-0.2
112,557	-		GFF97	0.16	+0.4
112,559	+		GFF97	0.16	-0.8
112,559	+		GFF97	0.16	-0.2
112,559	+		GFF97	0.16	-1.0
112,559	+		GFF97	0.16	-0.0
112,560	-		GFF97	0.16	-0.2
112,601	+		GFF97	0.16	-0.2
112,602	-		GFF97	0.16	-2.4
112,788	+		GFF97	0.17	-0.4
112,848	-		GFF97	0.18	+0.9
112,898	+		GFF97	0.18	+0.4
112,898	+		GFF97	0.18	+1.0
112,898	+		GFF97	0.18	-1.1
112,898	+		GFF97	0.18	+0.4
112,899	-		GFF97	0.18	+0.2
112,899	-		GFF97	0.18	-0.4
112,968	-		GFF97	0.19	+0.4
113,532	-		GFF97	0.23	-0.2
113,543	+		GFF97	0.23	-0.8
113,544	-		GFF97	0.23	-1.0
113,544	-		GFF97	0.23	-0.3
113,665	-		GFF97	0.24	-0.5
113,665	-		GFF97	0.24	-1.6
113,666	+		GFF97	0.24	-1.2
113,666	+		GFF97	0.24	-1.2
113,666	+		GFF97	0.24	+0.7
113,666	+		GFF97	0.24	-0.5
113,667	-		GFF97	0.24	-0.1
113,668	+		GFF97	0.24	+0.8
113,668	+		GFF97	0.24	-0.9
113,668	+		GFF97	0.24	-0.1
113,668	+		GFF97	0.24	-0.8
113,668	+		GFF97	0.24	+0.6
113,668	+		GFF97	0.24	-0.4
113,668	+		GFF97	0.24	+0.3
113,669	-		GFF97	0.24	+0.6
113,669	-		GFF97	0.24	-0.5
113,669	-		GFF97	0.24	-0.5
113,669	-		GFF97	0.24	-0.5
113,669	-		GFF97	0.24	-1.8
113,809	+		GFF97	0.25	+0.2
113,809	+		GFF97	0.25	-1.0
113,809	+		GFF97	0.25	-1.4
113,809	+		GFF97	0.25	+0.5
113,810	-		GFF97	0.25	+0.1
113,810	-		GFF97	0.25	-0.4
113,810	-		GFF97	0.25	-0.4
113,810	-		GFF97	0.25	-1.0
113,912	+		GFF97	0.26	+0.1
114,076	+		GFF97	0.27	+0.7
114,076	+		GFF97	0.27	-0.5
114,077	-		GFF97	0.27	-0.9
114,191	+		GFF97	0.28	-0.6
114,191	+		GFF97	0.28	-0.2
114,192	-		GFF97	0.28	+2.2
114,192	-		GFF97	0.28	-0.2
114,192	-		GFF97	0.28	+0.5
114,192	-		GFF97	0.28	+1.0
114,192	-		GFF97	0.28	+0.8
114,247	-		GFF97	0.29	+0.2
114,348	-		GFF97	0.29	-0.2
114,348	-		GFF97	0.29	-0.0
114,348	-		GFF97	0.29	+1.0
114,461	+		GFF97	0.30	-0.2
114,462	-		GFF97	0.30	+0.1
114,462	-		GFF97	0.30	+0.4
114,508	+		GFF97	0.31	-0.4
114,508	+		GFF97	0.31	-0.1
114,509	-		GFF97	0.31	+0.0
114,509	-		GFF97	0.31	+0.3
114,509	-		GFF97	0.31	+0.3
114,631	+		GFF97	0.32	-0.4
114,632	-		GFF97	0.32	-0.4
114,632	-		GFF97	0.32	+2.5
114,632	-		GFF97	0.32	+0.3
114,723	-		GFF97	0.32	-0.0
114,729	-		GFF97	0.32	+2.0
114,821	+		GFF97	0.33	-0.2
114,821	+		GFF97	0.33	-0.6
114,821	+		GFF97	0.33	+1.0
114,822	-		GFF97	0.33	-0.2
114,822	-		GFF97	0.33	+2.0
114,983	+		GFF97	0.34	-0.0
114,983	+		GFF97	0.34	+0.0
114,984	-		GFF97	0.34	-0.2
115,167	+		GFF97	0.36	+0.2
115,253	+		GFF97	0.37	+1.0
115,254	-		GFF97	0.37	+0.2
115,406	-		GFF97	0.38	-0.5
115,560	-		GFF97	0.39	-0.5
115,560	-		GFF97	0.39	-1.0
115,560	-		GFF97	0.39	-0.2
115,586	+		GFF97	0.39	+1.6
115,586	+		GFF97	0.39	-0.1
115,586	+		GFF97	0.39	+1.0
115,769	+		GFF97	0.41	-0.0
115,769	+		GFF97	0.41	+0.4
115,769	+		GFF97	0.41	-0.7
115,769	+		GFF97	0.41	-0.1
115,769	+		GFF97	0.41	+1.2
115,770	-		GFF97	0.41	+1.4
115,770	-		GFF97	0.41	-1.0
115,770	-		GFF97	0.41	-0.0
116,075	+		GFF97	0.43	-0.4
116,111	+		GFF97	0.43	+1.0
116,226	-		GFF97	0.44	+2.0
116,376	-		GFF97	0.45	+0.6
116,380	+		GFF97	0.45	-1.5
116,381	+		GFF97	0.45	+2.0
116,381	+		GFF97	0.45	+1.5
116,381	+		GFF97	0.45	+0.8
116,382	-		GFF97	0.45	+0.2
116,382	-		GFF97	0.45	+0.2
116,382	-		GFF97	0.45	-1.4
116,445	-		GFF97	0.46	+0.3
116,865	-		GFF97	0.49	+0.7
116,882	+		GFF97	0.49	+2.0
116,882	+		GFF97	0.49	+0.0
116,882	+		GFF97	0.49	-0.8
116,882	+		GFF97	0.49	-0.2
117,060	-		GFF97	0.51	-0.4
117,404	+		GFF97	0.53	+0.2
117,495	-		GFF97	0.54	-1.3
117,510	-		GFF97	0.54	-0.9
117,510	-		GFF97	0.54	-0.4
117,599	+		GFF97	0.55	-0.6
117,599	+		GFF97	0.55	-0.0
117,599	+		GFF97	0.55	-0.1
117,600	-		GFF97	0.55	-0.6
117,620	+		GFF97	0.55	-1.9
117,620	+		GFF97	0.55	-0.1
117,620	+		GFF97	0.55	-0.6
117,621	-		GFF97	0.55	-0.3
117,717	-		GFF97	0.56	+0.4
117,717	-		GFF97	0.56	+0.2
117,746	+		GFF97	0.56	+0.4
117,747	-		GFF97	0.56	-1.2
117,747	-		GFF97	0.56	-0.1
117,747	-		GFF97	0.56	+1.3
117,812	-		GFF97	0.56	-1.4
117,812	-		GFF97	0.56	-0.5
117,977	+		GFF97	0.58	-0.4
117,977	+		GFF97	0.58	-0.1
117,977	+		GFF97	0.58	-0.7
117,977	+		GFF97	0.58	-0.4
117,978	-		GFF97	0.58	-1.4
117,978	-		GFF97	0.58	-1.0
117,984	-		GFF97	0.58	+0.5
117,984	-		GFF97	0.58	+0.4
118,010	+		GFF97	0.58	-0.6
118,253	+		GFF97	0.60	+0.4
118,253	+		GFF97	0.60	-0.3
118,283	+		GFF97	0.60	+0.4
118,283	+		GFF97	0.60	-0.0
118,283	+		GFF97	0.60	-1.2
118,294	-		GFF97	0.60	-0.6
118,439	+		GFF97	0.61	+0.6
118,439	+		GFF97	0.61	+0.4
118,454	-		GFF97	0.61	+1.4
118,495	+		GFF97	0.62	-0.0
118,628	+		GFF97	0.63	+0.6
118,628	+		GFF97	0.63	+0.4
118,628	+		GFF97	0.63	+0.1
118,682	+		GFF97	0.63	+0.5
118,682	+		GFF97	0.63	-0.5
118,683	-		GFF97	0.63	-0.1
118,683	-		GFF97	0.63	+0.8
118,686	+		GFF97	0.63	+0.5
118,694	+		GFF97	0.63	-0.4
118,694	+		GFF97	0.63	-0.5
118,695	-		GFF97	0.63	-0.2
118,695	-		GFF97	0.63	-0.2
118,695	-		GFF97	0.63	-0.0
118,946	+		GFF97	0.65	+0.4
118,946	+		GFF97	0.65	-1.0
118,946	+		GFF97	0.65	-0.4
118,947	-		GFF97	0.65	-0.2
118,947	-		GFF97	0.65	+0.7
118,947	-		GFF97	0.65	-1.1
118,947	-		GFF97	0.65	+1.3
118,947	-		GFF97	0.65	+0.0
118,947	-		GFF97	0.65	+0.7
119,030	+		GFF97	0.66	+0.6
119,077	+		GFF97	0.66	-1.2
119,078	-		GFF97	0.66	+0.1
119,267	+		GFF97	0.68	+0.2
119,268	-		GFF97	0.68	-0.0
119,753	+		GFF97	0.71	+1.0
119,753	+		GFF97	0.71	-0.0
119,957	+		GFF97	0.73	-0.3
119,957	+		GFF97	0.73	+0.4
119,958	-		GFF97	0.73	-0.6
119,958	-		GFF97	0.73	-0.1
119,958	-		GFF97	0.73	-0.3
120,101	+		GFF97	0.74	+0.2
120,101	+		GFF97	0.74	+3.9
120,101	+		GFF97	0.74	-0.3
120,101	+		GFF97	0.74	-0.3
120,102	-		GFF97	0.74	+0.7
120,102	-		GFF97	0.74	-0.5
120,200	-		GFF97	0.75	-0.3
120,233	+		GFF97	0.75	-0.6
120,233	+		GFF97	0.75	+0.5
120,234	-		GFF97	0.75	-0.4
120,239	+		GFF97	0.75	-0.4
120,276	-		GFF97	0.75	+0.2
120,410	+		GFF97	0.77	+1.6
120,411	-		GFF97	0.77	+1.0
120,620	+		GFF97	0.78	-0.8
120,621	-		GFF97	0.78	-0.3
120,851	-		GFF97	0.80	-0.6
120,851	-		GFF97	0.80	+0.0
120,851	-		GFF97	0.80	-0.2
120,851	-		GFF97	0.80	+1.3
120,965	+		GFF97	0.81	+0.3
120,966	-		GFF97	0.81	+0.2
120,966	-		GFF97	0.81	-0.3
120,966	-		GFF97	0.81	-0.3
120,966	-		GFF97	0.81	+1.0
121,050	+		GFF97	0.81	-0.1
121,051	-		GFF97	0.81	+0.5
121,115	+		GFF97	0.82	-0.7
121,115	+		GFF97	0.82	+1.0
121,116	-		GFF97	0.82	+0.6
121,127	+		GFF97	0.82	-0.0
121,127	+		GFF97	0.82	-0.4
121,229	+		GFF97	0.83	-0.4
121,352	+		GFF97	0.84	+1.0
121,352	+		GFF97	0.84	+1.2
121,353	-		GFF97	0.84	-0.2
121,353	-		GFF97	0.84	-1.8
121,353	-		GFF97	0.84	-0.2
121,359	-		GFF97	0.84	+1.8
121,409	+		GFF97	0.84	-0.6
121,409	+		GFF97	0.84	-0.9
121,409	+		GFF97	0.84	-0.8
121,410	-		GFF97	0.84	+0.2
121,421	+		GFF97	0.84	-1.0
121,421	+		GFF97	0.84	+0.4
121,421	+		GFF97	0.84	-0.3
121,422	-		GFF97	0.84	+0.8
121,454	+		GFF97	0.85	-0.4
121,454	+		GFF97	0.85	+0.5
121,454	+		GFF97	0.85	+0.9
121,667	+		GFF97	0.86	-0.1
121,667	+		GFF97	0.86	-0.2
121,668	-		GFF97	0.86	-0.6
121,668	-		GFF97	0.86	+0.4
121,668	-		GFF97	0.86	+0.4
121,686	-		GFF97	0.86	-0.0
121,858	+		GFF97	0.88	+0.1
122,513	+				+0.2
122,612	+				-0.4
122,612	+				+1.4
122,612	+				+0.8
122,671	-				+0.3
123,803	+				+1.4
123,804	-				-0.3
123,804	-				-0.8
123,804	-				-1.2