Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF910 and GFF911 are separated by 39 nucleotides GFF911 and GFF912 are separated by 14 nucleotides GFF912 and GFF913 overlap by 4 nucleotides
GFF910 - hypothetical protein, at 220,626 to 222,359
GFF910
GFF911 - KEGG: transcriptional regulator, at 222,399 to 223,046
GFF911
GFF912 - putative acetyl esterase, at 223,061 to 224,053
GFF912
GFF913 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 224,050 to 225,714
GFF913
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1
2
3 at 222.523 kb on + strand, within GFF911 at 222.524 kb on - strand, within GFF911 at 222.524 kb on - strand, within GFF911 at 222.524 kb on - strand, within GFF911 at 222.524 kb on - strand, within GFF911 at 222.524 kb on - strand, within GFF911 at 222.589 kb on + strand, within GFF911 at 222.589 kb on + strand, within GFF911 at 222.629 kb on - strand, within GFF911 at 222.629 kb on - strand, within GFF911 at 222.740 kb on - strand, within GFF911 at 222.740 kb on - strand, within GFF911 at 222.740 kb on - strand, within GFF911 at 222.740 kb on - strand, within GFF911 at 222.740 kb on - strand, within GFF911 at 222.772 kb on + strand, within GFF911 at 222.772 kb on + strand, within GFF911 at 222.772 kb on + strand, within GFF911 at 222.772 kb on + strand, within GFF911 at 222.773 kb on - strand, within GFF911 at 222.773 kb on - strand, within GFF911 at 222.773 kb on - strand, within GFF911 at 223.027 kb on + strand at 223.027 kb on + strand at 223.027 kb on + strand at 223.027 kb on + strand at 223.028 kb on - strand at 223.028 kb on - strand at 223.042 kb on + strand at 223.042 kb on + strand at 223.042 kb on + strand at 223.042 kb on + strand at 223.042 kb on + strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.078 kb on + strand at 223.079 kb on - strand at 223.091 kb on + strand at 223.091 kb on + strand at 223.092 kb on - strand at 223.351 kb on - strand, within GFF912 at 223.434 kb on + strand, within GFF912 at 223.435 kb on - strand, within GFF912 at 223.435 kb on - strand, within GFF912 at 223.443 kb on + strand, within GFF912 at 223.444 kb on - strand, within GFF912 at 223.633 kb on + strand, within GFF912 at 223.653 kb on + strand, within GFF912 at 223.653 kb on + strand, within GFF912 at 223.654 kb on - strand, within GFF912 at 223.654 kb on - strand, within GFF912 at 223.755 kb on + strand, within GFF912 at 223.756 kb on - strand, within GFF912 at 223.756 kb on - strand, within GFF912 at 223.791 kb on + strand, within GFF912 at 223.792 kb on - strand, within GFF912 at 223.792 kb on - strand, within GFF912 at 223.920 kb on + strand, within GFF912 at 224.029 kb on - strand at 224.138 kb on + strand at 224.139 kb on - strand at 224.139 kb on - strand at 224.870 kb on - strand, within GFF913 at 224.948 kb on + strand, within GFF913 at 224.948 kb on + strand, within GFF913 at 224.949 kb on - strand, within GFF913 at 224.949 kb on - strand, within GFF913
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 222,523 + GFF911 0.19 -1.6 222,524 - GFF911 0.19 -0.5 222,524 - GFF911 0.19 +0.9 222,524 - GFF911 0.19 -0.4 222,524 - GFF911 0.19 -0.1 222,524 - GFF911 0.19 -0.1 222,589 + GFF911 0.29 -0.3 222,589 + GFF911 0.29 -0.4 222,629 - GFF911 0.35 -0.0 222,629 - GFF911 0.35 -0.7 222,740 - GFF911 0.53 +0.6 222,740 - GFF911 0.53 +0.1 222,740 - GFF911 0.53 +0.6 222,740 - GFF911 0.53 -1.7 222,740 - GFF911 0.53 +0.4 222,772 + GFF911 0.58 -0.6 222,772 + GFF911 0.58 -0.3 222,772 + GFF911 0.58 -0.3 222,772 + GFF911 0.58 -1.5 222,773 - GFF911 0.58 +1.9 222,773 - GFF911 0.58 +0.9 222,773 - GFF911 0.58 -1.1 223,027 + +0.6 223,027 + +1.5 223,027 + -1.0 223,027 + +1.3 223,028 - -0.2 223,028 - -0.7 223,042 + -0.4 223,042 + -1.3 223,042 + -0.2 223,042 + -0.3 223,042 + +0.5 223,043 - -0.0 223,043 - +0.1 223,043 - -0.1 223,043 - -0.9 223,043 - -1.2 223,043 - -0.5 223,078 + +0.3 223,079 - +0.0 223,091 + +0.1 223,091 + +0.3 223,092 - -0.1 223,351 - GFF912 0.29 -0.1 223,434 + GFF912 0.38 -0.1 223,435 - GFF912 0.38 -0.4 223,435 - GFF912 0.38 +0.8 223,443 + GFF912 0.38 +0.1 223,444 - GFF912 0.39 +1.1 223,633 + GFF912 0.58 +0.2 223,653 + GFF912 0.60 +0.9 223,653 + GFF912 0.60 -1.3 223,654 - GFF912 0.60 +3.6 223,654 - GFF912 0.60 -0.0 223,755 + GFF912 0.70 -0.3 223,756 - GFF912 0.70 -0.3 223,756 - GFF912 0.70 -0.7 223,791 + GFF912 0.74 +0.3 223,792 - GFF912 0.74 -1.1 223,792 - GFF912 0.74 +0.0 223,920 + GFF912 0.87 -0.4 224,029 - -0.4 224,138 + -1.4 224,139 - -0.4 224,139 - +0.3 224,870 - GFF913 0.49 -0.4 224,948 + GFF913 0.54 +0.1 224,948 + GFF913 0.54 -0.1 224,949 - GFF913 0.54 +1.1 224,949 - GFF913 0.54 +0.9
Or see this region's nucleotide sequence