Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF907 and GFF908 are separated by 99 nucleotides GFF908 and GFF909 are separated by 18 nucleotides
GFF907 - Transcriptional regulator, LysR family, at 217,532 to 218,425
GFF907
GFF908 - Putative oxidoreductase, at 218,525 to 219,535
GFF908
GFF909 - Alcohol dehydrogenase (EC 1.1.1.1), at 219,554 to 220,609
GFF909
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2 at 217.599 kb on + strand at 217.599 kb on + strand at 217.599 kb on + strand at 217.815 kb on + strand, within GFF907 at 217.815 kb on + strand, within GFF907 at 217.816 kb on - strand, within GFF907 at 217.816 kb on - strand, within GFF907 at 217.816 kb on - strand, within GFF907 at 217.816 kb on - strand, within GFF907 at 217.816 kb on - strand, within GFF907 at 218.068 kb on - strand, within GFF907 at 218.068 kb on - strand, within GFF907 at 218.531 kb on + strand at 218.532 kb on - strand at 218.532 kb on - strand at 218.681 kb on + strand, within GFF908 at 218.681 kb on + strand, within GFF908 at 218.681 kb on + strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.864 kb on + strand, within GFF908 at 218.864 kb on + strand, within GFF908 at 218.879 kb on + strand, within GFF908 at 218.879 kb on + strand, within GFF908 at 218.879 kb on + strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 219.062 kb on + strand, within GFF908 at 219.062 kb on + strand, within GFF908 at 219.062 kb on + strand, within GFF908 at 219.173 kb on + strand, within GFF908 at 219.173 kb on + strand, within GFF908 at 219.401 kb on + strand, within GFF908 at 219.401 kb on + strand, within GFF908 at 219.401 kb on + strand, within GFF908 at 219.401 kb on + strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.572 kb on + strand at 219.662 kb on + strand, within GFF909 at 219.662 kb on + strand, within GFF909 at 219.663 kb on - strand, within GFF909 at 219.663 kb on - strand, within GFF909 at 219.663 kb on - strand, within GFF909 at 219.722 kb on + strand, within GFF909 at 219.722 kb on + strand, within GFF909 at 219.722 kb on + strand, within GFF909 at 219.899 kb on + strand, within GFF909 at 219.899 kb on + strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 220.049 kb on + strand, within GFF909 at 220.049 kb on + strand, within GFF909 at 220.050 kb on - strand, within GFF909
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 217,599 + +0.8 217,599 + -0.8 217,599 + -1.1 217,815 + GFF907 0.32 -1.9 217,815 + GFF907 0.32 +0.7 217,816 - GFF907 0.32 -0.2 217,816 - GFF907 0.32 -0.3 217,816 - GFF907 0.32 +0.2 217,816 - GFF907 0.32 +0.9 217,816 - GFF907 0.32 -0.3 218,068 - GFF907 0.60 +0.5 218,068 - GFF907 0.60 +1.9 218,531 + -0.1 218,532 - -0.7 218,532 - -1.3 218,681 + GFF908 0.15 -0.8 218,681 + GFF908 0.15 +0.1 218,681 + GFF908 0.15 +0.1 218,682 - GFF908 0.16 -1.4 218,682 - GFF908 0.16 -1.3 218,682 - GFF908 0.16 +0.6 218,682 - GFF908 0.16 +0.0 218,682 - GFF908 0.16 +0.4 218,682 - GFF908 0.16 -0.2 218,864 + GFF908 0.34 +0.1 218,864 + GFF908 0.34 -1.4 218,879 + GFF908 0.35 -1.6 218,879 + GFF908 0.35 +0.5 218,879 + GFF908 0.35 -0.3 218,880 - GFF908 0.35 -0.4 218,880 - GFF908 0.35 -0.8 218,880 - GFF908 0.35 +0.7 218,880 - GFF908 0.35 +0.2 218,880 - GFF908 0.35 +0.3 218,880 - GFF908 0.35 -0.5 219,062 + GFF908 0.53 -0.1 219,062 + GFF908 0.53 -2.6 219,062 + GFF908 0.53 +0.7 219,173 + GFF908 0.64 -0.8 219,173 + GFF908 0.64 -0.9 219,401 + GFF908 0.87 -0.4 219,401 + GFF908 0.87 -0.0 219,401 + GFF908 0.87 -1.6 219,401 + GFF908 0.87 +0.2 219,402 - GFF908 0.87 +1.4 219,402 - GFF908 0.87 -1.0 219,402 - GFF908 0.87 -1.3 219,402 - GFF908 0.87 +0.5 219,402 - GFF908 0.87 +0.6 219,402 - GFF908 0.87 -0.4 219,572 + -0.9 219,662 + GFF909 0.10 -1.3 219,662 + GFF909 0.10 +0.4 219,663 - GFF909 0.10 +1.1 219,663 - GFF909 0.10 -0.0 219,663 - GFF909 0.10 +1.1 219,722 + GFF909 0.16 -0.1 219,722 + GFF909 0.16 -1.6 219,722 + GFF909 0.16 +1.6 219,899 + GFF909 0.33 -1.4 219,899 + GFF909 0.33 -1.2 219,900 - GFF909 0.33 -0.2 219,900 - GFF909 0.33 +0.5 219,900 - GFF909 0.33 -0.2 219,900 - GFF909 0.33 +1.4 219,900 - GFF909 0.33 -1.4 219,900 - GFF909 0.33 -0.1 219,900 - GFF909 0.33 -1.0 220,049 + GFF909 0.47 +0.9 220,049 + GFF909 0.47 -1.1 220,050 - GFF909 0.47 +0.7
Or see this region's nucleotide sequence